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    LOC103183364 TNF receptor-associated factor 4 [ Callorhinchus milii (elephant shark) ]

    Gene ID: 103183364, updated on 7-Dec-2023

    Summary

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    Gene symbol
    LOC103183364
    Gene description
    TNF receptor-associated factor 4
    See related
    Ensembl:ENSCMIG00000012551
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Callorhinchus milii
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Chondrichthyes; Holocephali; Chimaeriformes; Callorhinchidae; Callorhinchus
    Also known as
    traf4
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    Genomic context

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    See LOC103183364 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    101 current IMCB_Cmil_1.0 (GCF_018977255.1) Unplaced Scaffold NW_024704751.1 (4864714..4913944)
    100 previous assembly Callorhinchus_milii-6.1.3 (GCF_000165045.1) Unplaced Scaffold NW_006890135.1 (2342196..2357056)

    NW_024704751.1Genomic Context describing neighboring genes Neighboring gene TLC domain containing 1 Neighboring gene NIMA-related kinase 8 Neighboring gene uncharacterized LOC103183331 Neighboring gene carboxypeptidase D

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Elephant shark genome provides unique insights into gnathostome evolution. Venkatesh B, et al. Nature, 2014 Jan 9. PMID 24402279, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in activation of NF-kappaB-inducing kinase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in positive regulation of JNK cascade IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of apoptotic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in signal transduction IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    TNF receptor-associated factor 4

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Callorhinchus milii Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference IMCB_Cmil_1.0 Primary Assembly

    Genomic

    1. NW_024704751.1 Reference IMCB_Cmil_1.0 Primary Assembly

      Range
      4864714..4913944
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_042338733.1 → XP_042194667.1  TNF receptor-associated factor 4

      UniProtKB/TrEMBL
      A0A4W3IJ09, V9KSV2
      Conserved Domains (5) summary
      PLN03086
      Location:113 → 211
      PLN03086; PRLI-interacting factor K; Provisional
      cd03781
      Location:308 → 463
      MATH_TRAF4; Tumor Necrosis Factor Receptor (TNFR)-Associated Factor (TRAF) family, TRAF4 subfamily, TRAF domain, C-terminal MATH subdomain; composed of proteins with similarity to human TRAF4, including the Drosophila protein DTRAF1. TRAF molecules serve as adapter ...
      pfam02176
      Location:210 → 269
      zf-TRAF; TRAF-type zinc finger
      cd16641
      Location:15 → 59
      mRING-HC-C3HC3D_TRAF4; Modified RING finger, HC subclass (C3HC3D-type), found in tumor necrosis factor (TNF) receptor-associated factor 4 (TRAF4) and similar proteins
      cl40617
      Location:102 → 156
      zf-TRAF; TRAF-type zinc finger
    Nucleotide Protein
    Heading Accession and Version

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