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    lpd-9 LiPid Depleted [ Caenorhabditis elegans ]

    Gene ID: 179477, updated on 9-Dec-2024

    Summary

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    Official Symbol
    lpd-9
    Official Full Name
    LiPid Depleted
    Primary source
    WormBase:WBGene00003065
    Locus tag
    CELE_T21C9.5
    See related
    AllianceGenome:WB:WBGene00003065
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Caenorhabditis elegans (strain: Bristol N2)
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
    Summary
    Involved in lipid storage. Predicted to be located in membrane. [provided by Alliance of Genome Resources, Dec 2024]
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    Genomic context

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    See lpd-9 in Genome Data Viewer
    Location:
    chromosome: V
    Exon count:
    3
    Sequence:
    Chromosome: V; NC_003283.11 (10579305..10580693)

    Chromosome V - NC_003283.11Genomic Context describing neighboring genes Neighboring gene Mitochondrial scaffolding protein 1;PDZ domain-containing protein Neighboring gene Enhancer of rudimentary homolog Neighboring gene Phosphoenolpyruvate synthase Neighboring gene Serpentine receptor class gamma Neighboring gene TransThyretin-Related family domain

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003283.11

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. C elegans: a model for exploring the genetics of fat storage. McKay RM, et al. Dev Cell, 2003 Jan. PMID 12530969, Free PMC Article
    2. Germline Maintenance Through the Multifaceted Activities of GLH/Vasa in Caenorhabditis elegans P Granules. Marnik EA, et al. Genetics, 2019 Nov. PMID 31506335, Free PMC Article
    3. Large-scale RNAi screens identify novel genes that interact with the C. elegans retinoblastoma pathway as well as splicing-related components with synMuv B activity. Ceron J, et al. BMC Dev Biol, 2007 Apr 6. PMID 17417969, Free PMC Article
    4. Amino acid and protein specificity of protein fatty acylation in C. elegans. Zhang B, et al. Proc Natl Acad Sci U S A, 2024 Jan 30. PMID 38252833, Free PMC Article
    5. Novel LOTUS-domain proteins are organizational hubs that recruit C. elegans Vasa to germ granules. Cipriani PG, et al. Elife, 2021 Jul 5. PMID 34223818, Free PMC Article

    See all (6) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by WormBase

    Process Evidence Code Pubs
    involved_in lipid storage IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    LiPid Depleted
    NP_001256228.1
    • Product from WormBase gene class lpd;
      Confirmed by transcript evidence
    NP_001256229.1
    • Product from WormBase gene class lpd;
      Confirmed by transcript evidence

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003283.11 Reference assembly

      Range
      10579305..10580693
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001269299.3 → NP_001256228.1  LiPid Depleted [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_001256228.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q22641

    2. NM_001269300.3 → NP_001256229.1  LiPid Depleted [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_001256229.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      D5MCR9
    Nucleotide Protein
    Heading Accession and Version

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