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    gid-1 B30.2/SPRY domain-containing protein;CTLH domain-containing protein [ Caenorhabditis elegans ]

    Gene ID: 173332, updated on 9-Dec-2024

    Summary

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    Official Symbol
    gid-1
    Official Full Name
    B30.2/SPRY domain-containing protein;CTLH domain-containing protein
    Primary source
    WormBase:WBGene00013202
    Locus tag
    CELE_Y54E5A.7
    See related
    AllianceGenome:WB:WBGene00013202
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Caenorhabditis elegans (strain: Bristol N2)
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
    Summary
    Is expressed in several structures, including anal depressor muscle; hypodermis; nervous system; oocyte; and reproductive system. Orthologous to human RANBP10 (RAN binding protein 10) and RANBP9 (RAN binding protein 9). [provided by Alliance of Genome Resources, Dec 2024]
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    Genomic context

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    See gid-1 in Genome Data Viewer
    Location:
    chromosome: I
    Exon count:
    11
    Sequence:
    Chromosome: I; NC_003279.8 (14711082..14715030)

    Chromosome I - NC_003279.8Genomic Context describing neighboring genes Neighboring gene Nucleoporin p58/p45 Neighboring gene Polysaccharide biosynthesis domain-containing protein Neighboring gene DRBM domain-containing protein Neighboring gene Conserved plasma membrane protein;Pyridoxamine 5'-phosphate oxidase;Uncharacterized protein Neighboring gene Proteasome subunit pbs-5

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003279.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Defect-buffering cellular plasticity increases robustness of metazoan embryogenesis. Xiao L, et al. Cell Syst, 2022 Aug 17. PMID 35882226
    2. A map of the interactome network of the metazoan C. elegans. Li S, et al. Science, 2004 Jan 23. PMID 14704431, Free PMC Article
    3. OrthoList: a compendium of C. elegans genes with human orthologs. Shaye DD, et al. PLoS One, 2011. PMID 21647448, Free PMC Article
    4. OrthoList 2: A New Comparative Genomic Analysis of Human and Caenorhabditis elegans Genes. Kim W, et al. Genetics, 2018 Oct. PMID 30120140, Free PMC Article
    5. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Markers

    Homology

    General protein information

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    Preferred Names
    B30.2/SPRY domain-containing protein;CTLH domain-containing protein
    NP_001252408.1
    • Confirmed by transcript evidence
    NP_001252409.1
    • Confirmed by transcript evidence
    NP_001252410.1
    • Confirmed by transcript evidence
    NP_001252411.1
    • Confirmed by transcript evidence
    NP_001382716.1
    • Confirmed by transcript evidence

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003279.8 Reference assembly

      Range
      14711082..14715030
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001265479.3 → NP_001252408.1  B30.2/SPRY domain-containing protein [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_001252408.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q9XWK4
      Conserved Domains (2) summary
      smart00668
      Location:282 → 340
      CTLH; C-terminal to LisH motif
      cl02614
      Location:75 → 212
      SPRY; SPRY domain

    2. NM_001265480.3 → NP_001252409.1  CTLH domain-containing protein [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_001252409.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      F3Y5R0
      Conserved Domains (1) summary
      smart00668
      Location:55 → 113
      CTLH; C-terminal to LisH motif

    3. NM_001395800.1 → NP_001382716.1  B30.2/SPRY domain-containing protein [Caenorhabditis elegans]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A8D9MH54

    4. NM_001265481.3 → NP_001252410.1  B30.2/SPRY domain-containing protein [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_001252410.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      F3Y5R1

    5. NM_001265482.3 → NP_001252411.1  B30.2/SPRY domain-containing protein [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_001252411.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      F3Y5R2
    Nucleotide Protein
    Heading Accession and Version

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