U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from Protein

    • Showing Current items.

    RAD50 RAD50 double strand break repair protein [ Macaca mulatta (Rhesus monkey) ]

    Gene ID: 710718, updated on 5-Mar-2024

    Summary

    Go to the top of the page Help
    Gene symbol
    RAD50
    Gene description
    RAD50 double strand break repair protein
    See related
    Ensembl:ENSMMUG00000003130
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Macaca mulatta
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
    Orthologs
    human mouse all
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See RAD50 in Genome Data Viewer
    Location:
    chromosome: 6
    Exon count:
    28
    Annotation release Status Assembly Chr Location
    103 current Mmul_10 (GCF_003339765.1) 6 NC_041759.1 (129998030..130086397)
    102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 6 NC_027898.1 (130239775..130330792)

    Chromosome 6 - NC_041759.1Genomic Context describing neighboring genes Neighboring gene colitis associated IRF1 antisense regulator of intestinal homeostasis Neighboring gene interferon regulatory factor 1 Neighboring gene interleukin 5 Neighboring gene uncharacterized LOC114678902 Neighboring gene uncharacterized LOC114678713 Neighboring gene interleukin 13

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ATP hydrolysis activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables G-quadruplex DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables double-stranded telomeric DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables single-stranded telomeric DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in DNA duplex unwinding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in chromosome organization involved in meiotic cell cycle IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in double-strand break repair IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in telomere maintenance via recombination IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in telomere maintenance via telomerase IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of Mre11 complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in condensed nuclear chromosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    DNA repair protein RAD50
    Names
    RAD50 homolog

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Mmul_10 Primary Assembly

    Genomic

    1. NC_041759.1 Reference Mmul_10 Primary Assembly

      Range
      129998030..130086397
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015140734.2 → XP_014996220.1  DNA repair protein RAD50 isoform X1

      UniProtKB/TrEMBL
      F7DGI4, H9YVE3
      Related
      ENSMMUP00000004184.3, ENSMMUT00000004435.4
      Conserved Domains (4) summary
      TIGR00606
      Location:2 → 1323
      rad50; rad50
      cd03240
      Location:1206 → 1308
      ABC_Rad50; ATP-binding cassette domain of Rad50
      pfam00901
      Location:720 → 973
      Orbi_VP5; Orbivirus outer capsid protein VP5
      pfam04423
      Location:670 → 720
      Rad50_zn_hook; Rad50 zinc hook motif

    2. XM_015140735.2 → XP_014996221.1  DNA repair protein RAD50 isoform X1

      UniProtKB/TrEMBL
      F7DGI4, H9YVE3
      Conserved Domains (4) summary
      TIGR00606
      Location:2 → 1323
      rad50; rad50
      cd03240
      Location:1206 → 1308
      ABC_Rad50; ATP-binding cassette domain of Rad50
      pfam00901
      Location:720 → 973
      Orbi_VP5; Orbivirus outer capsid protein VP5
      pfam04423
      Location:670 → 720
      Rad50_zn_hook; Rad50 zinc hook motif

    3. XM_015140736.2 → XP_014996222.1  DNA repair protein RAD50 isoform X2

      UniProtKB/TrEMBL
      H9FNF3, H9YVE3
      Related
      ENSMMUP00000053030.2, ENSMMUT00000068023.2
      Conserved Domains (1) summary
      TIGR00606
      Location:2 → 1312
      rad50

    4. XM_015140739.2 → XP_014996225.1  DNA repair protein RAD50 isoform X6

      UniProtKB/TrEMBL
      A0A1D5QN14
      Conserved Domains (1) summary
      TIGR00606
      Location:1 → 1173
      rad50

    5. XM_015140737.2 → XP_014996223.1  DNA repair protein RAD50 isoform X3

      UniProtKB/TrEMBL
      A0A1D5QN14
      Conserved Domains (4) summary
      TIGR00606
      Location:38 → 1289
      rad50; rad50
      cd03240
      Location:1172 → 1274
      ABC_Rad50; ATP-binding cassette domain of Rad50
      pfam04423
      Location:636 → 686
      Rad50_zn_hook; Rad50 zinc hook motif
      cl21455
      Location:37 → 132
      P-loop_NTPase; P-loop containing Nucleoside Triphosphate Hydrolases

    6. XM_028849711.1 → XP_028705544.1  DNA repair protein RAD50 isoform X4

      UniProtKB/TrEMBL
      A0A1D5QN14
      Conserved Domains (1) summary
      TIGR00606
      Location:1 → 1224
      rad50

    7. XM_015140738.2 → XP_014996224.1  DNA repair protein RAD50 isoform X5

      UniProtKB/TrEMBL
      A0A1D5QN14
      Conserved Domains (4) summary
      TIGR00606
      Location:1 → 1184
      rad50; rad50
      cd03240
      Location:1067 → 1169
      ABC_Rad50; ATP-binding cassette domain of Rad50
      pfam04423
      Location:531 → 581
      Rad50_zn_hook; Rad50 zinc hook motif
      cl21455
      Location:10 → 27
      P-loop_NTPase; P-loop containing Nucleoside Triphosphate Hydrolases
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.