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    TRIM47 tripartite motif containing 47 [ Macaca mulatta (Rhesus monkey) ]

    Gene ID: 704642, updated on 17-Aug-2024

    Summary

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    Official Symbol
    TRIM47provided by VGNC
    Official Full Name
    tripartite motif containing 47provided by VGNC
    Primary source
    VGNC:VGNC:79171
    See related
    Ensembl:ENSMMUG00000009377
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Macaca mulatta
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
    Orthologs
    human mouse all
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    Genomic context

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    See TRIM47 in Genome Data Viewer
    Location:
    chromosome: 16
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    103 current Mmul_10 (GCF_003339765.1) 16 NC_041769.1 (72245483..72249949, complement)
    102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 16 NC_027908.1 (69590636..69595111, complement)

    Chromosome 16 - NC_041769.1Genomic Context describing neighboring genes Neighboring gene unc-13 homolog D Neighboring gene WW domain binding protein 2 Neighboring gene tripartite motif containing 65 Neighboring gene uncharacterized LOC114673191 Neighboring gene mitochondrial ribosomal protein L38

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    tripartite motif-containing protein 47; E3 ubiquitin-protein ligase TRIM47

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Mmul_10 Primary Assembly

    Genomic

    1. NC_041769.1 Reference Mmul_10 Primary Assembly

      Range
      72245483..72249949 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_001101126.4 → XP_001101126.1  E3 ubiquitin-protein ligase TRIM47 isoform X1

      See identical proteins and their annotated locations for XP_001101126.1

      UniProtKB/TrEMBL
      F7HF49
      Related
      ENSMMUP00000012279.2, ENSMMUT00000013100.4
      Conserved Domains (3) summary
      pfam00643
      Location:180 → 219
      zf-B_box; B-box zinc finger
      cd15808
      Location:423 → 628
      SPRY_PRY_TRIM47; PRY/SPRY domain in tripartite motif-containing protein 47 (TRIM47), also known as RING finger protein 100 (RNF100) or Gene overexpressed in astrocytoma protein (GOA)
      cl17238
      Location:9 → 57
      RING; RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in ...

    2. XM_028836808.1 → XP_028692641.1  E3 ubiquitin-protein ligase TRIM47 isoform X2

      UniProtKB/TrEMBL
      G7NGR0
      Conserved Domains (1) summary
      cd15808
      Location:183 → 388
      SPRY_PRY_TRIM47; PRY/SPRY domain in tripartite motif-containing protein 47 (TRIM47), also known as RING finger protein 100 (RNF100) or Gene overexpressed in astrocytoma protein (GOA)
    Nucleotide Protein
    Heading Accession and Version

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