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    LOC100788875 phytanoyl-CoA dioxygenase domain-containing protein 1-like [ Glycine max (soybean) ]

    Gene ID: 100788875, updated on 7-Dec-2023

    Summary

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    Gene symbol
    LOC100788875
    Gene description
    phytanoyl-CoA dioxygenase domain-containing protein 1-like
    Locus tag
    GLYMA_07G219300v4
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Glycine max
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Glycine; Glycine subgen. Soja
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    Genomic context

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    See LOC100788875 in Genome Data Viewer
    Location:
    chromosome: 7
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    104 current Glycine_max_v4.0 (GCF_000004515.6) 7 NC_038243.2 (39612373..39616072)
    103 previous assembly Glycine_max_v2.1 (GCF_000004515.5) 7 NC_038243.1 (39286983..39290682)

    Chromosome 7 - NC_038243.2Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC100527505 Neighboring gene protein ESMERALDA 1 Neighboring gene WUSCHEL-related homeobox 6 Neighboring gene 40S ribosomal protein S17-4

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables phytanoyl-CoA dioxygenase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    Phytanoyl-CoA dioxygenase-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001255517.2 → NP_001242446.1  Phytanoyl-CoA dioxygenase-like

      See identical proteins and their annotated locations for NP_001242446.1

      Status: PROVISIONAL

      Source sequence(s)
      BT096844
      UniProtKB/TrEMBL
      C6TGT7, I1KM64
      Conserved Domains (1) summary
      pfam05721
      Location:12 → 249
      PhyH; Phytanoyl-CoA dioxygenase (PhyH)

    RefSeqs of Annotated Genomes: Glycine max Annotation Release 104 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Glycine_max_v4.0 Primary Assembly

    Genomic

    1. NC_038243.2 Reference Glycine_max_v4.0 Primary Assembly

      Range
      39612373..39616072
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

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