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    LOC100259512 small ribosomal subunit protein uS3x [ Vitis vinifera (wine grape) ]

    Gene ID: 100259512, updated on 23-Oct-2023

    Summary

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    Gene symbol
    LOC100259512
    Gene description
    small ribosomal subunit protein uS3x
    Locus tag
    VIT_00035451001
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Vitis vinifera
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; Vitales; Vitaceae; Viteae; Vitis
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    Genomic context

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    See LOC100259512 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2023_09 current ASM3070453v1 (GCF_030704535.1) 4 NC_081808.1 (1372810..1376924, complement)
    102 previous assembly 12X (GCF_000003745.3) 4 NC_012010.3 (1365835..1369948, complement)

    Chromosome 4 - NC_081808.1Genomic Context describing neighboring genes Neighboring gene mechanosensitive ion channel protein 10 Neighboring gene thermospermine synthase ACAULIS5 Neighboring gene uncharacterized LOC104878987 Neighboring gene peroxisome biogenesis factor 10 Neighboring gene NAD(P)H-quinone oxidoreductase subunit U, chloroplastic

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The high polyphenol content of grapevine cultivar tannat berries is conferred primarily by genes that are not shared with the reference genome. Da Silva C, et al. Plant Cell, 2013 Dec. PMID 24319081, Free PMC Article
    2. The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla. Jaillon O, et al. Nature, 2007 Sep 27. PMID 17721507
    3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables structural constituent of ribosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in translation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of cytosolic small ribosomal subunit IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    small ribosomal subunit protein uS3x
    Names
    40S ribosomal protein S3-3

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_030704535.1-RS_2023_09

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3070453v1 Primary Assembly

    Genomic

    1. NC_081808.1 Reference ASM3070453v1 Primary Assembly

      Range
      1372810..1376924 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_002281105.5 → XP_002281141.2  small ribosomal subunit protein uS3x

      See identical proteins and their annotated locations for XP_002281141.2

      UniProtKB/TrEMBL
      A0A438K6R2, A0A438K840, D7STV9
      Conserved Domains (1) summary
      PTZ00084
      Location:3 → 220
      PTZ00084; 40S ribosomal protein S3; Provisional
    Nucleotide Protein
    Heading Accession and Version

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