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    LOC11434892 CDK-activating kinase assembly factor MAT1 [ Medicago truncatula (barrel medic) ]

    Gene ID: 11434892, updated on 7-Dec-2023

    Summary

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    Gene symbol
    LOC11434892
    Gene description
    CDK-activating kinase assembly factor MAT1
    Locus tag
    MtrunA17_Chr6g0450591
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Medicago truncatula
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; Hologalegina; IRL clade; Trifolieae; Medicago
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    Genomic context

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    See LOC11434892 in Genome Data Viewer
    Location:
    chromosome: 6
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    102 current MtrunA17r5.0-ANR (GCF_003473485.1) 6 NC_053047.1 (1293760..1299557)
    101 previous assembly MedtrA17_4.0 (GCF_000219495.3) 6 NC_016412.2 (1260082..1265928)

    Chromosome 6 - NC_053047.1Genomic Context describing neighboring genes Neighboring gene serine/threonine-protein kinase BLUS1 Neighboring gene mitochondrial metalloendopeptidase OMA1 Neighboring gene probable phospholipid-transporting ATPase 8 Neighboring gene uncharacterized LOC11425315

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Dual RNA-Seq analysis of Medicago truncatula and the pea powdery mildew Erysiphe pisi uncovers distinct host transcriptional signatures during incompatible and compatible interactions and pathogen effector candidates. Gupta M, et al. Genomics, 2020 May. PMID 31837401
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in DNA repair IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of cyclin-dependent protein serine/threonine kinase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of transcription factor TFIIH holo complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    CDK-activating kinase assembly factor MAT1; uncharacterized protein LOC11434892
    Names
    putative cdk-activating kinase assembly factor MAT1/Tfb3

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Medicago truncatula Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference MtrunA17r5.0-ANR Primary Assembly

    Genomic

    1. NC_053047.1 Reference MtrunA17r5.0-ANR Primary Assembly

      Range
      1293760..1299557
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_024785370.2 → XP_024641138.1  CDK-activating kinase assembly factor MAT1 isoform X1

      UniProtKB/TrEMBL
      G7KI90, I3S2X9
      Conserved Domains (2) summary
      PHA03369
      Location:24 → 155
      PHA03369; capsid maturational protease; Provisional
      cl26974
      Location:11 → 86
      MAT1; CDK-activating kinase assembly factor MAT1

    2. XM_024785372.2 → XP_024641140.1  CDK-activating kinase assembly factor MAT1 isoform X1

      UniProtKB/TrEMBL
      G7KI90, I3S2X9
      Conserved Domains (2) summary
      PHA03369
      Location:24 → 155
      PHA03369; capsid maturational protease; Provisional
      cl26974
      Location:11 → 86
      MAT1; CDK-activating kinase assembly factor MAT1

    3. XM_013595338.3 → XP_013450792.1  uncharacterized protein LOC11434892 isoform X2

      UniProtKB/TrEMBL
      A0A072U569
      Conserved Domains (1) summary
      pfam06391
      Location:1 → 41
      MAT1; CDK-activating kinase assembly factor MAT1

    4. XM_003618225.4 → XP_003618273.1  CDK-activating kinase assembly factor MAT1 isoform X1

      See identical proteins and their annotated locations for XP_003618273.1

      UniProtKB/TrEMBL
      G7KI90, I3S2X9
      Conserved Domains (2) summary
      PHA03369
      Location:24 → 155
      PHA03369; capsid maturational protease; Provisional
      cl26974
      Location:11 → 86
      MAT1; CDK-activating kinase assembly factor MAT1
    Nucleotide Protein
    Heading Accession and Version

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