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    LOC11419661 CMP-sialic acid transporter 4 [ Medicago truncatula (barrel medic) ]

    Gene ID: 11419661, updated on 7-Dec-2023

    Summary

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    Gene symbol
    LOC11419661
    Gene description
    CMP-sialic acid transporter 4
    Locus tag
    MtrunA17_Chr5g0448741
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Medicago truncatula
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; Hologalegina; IRL clade; Trifolieae; Medicago
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    Genomic context

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    See LOC11419661 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    102 current MtrunA17r5.0-ANR (GCF_003473485.1) 5 NC_053046.1 (44718945..44724283)
    101 previous assembly MedtrA17_4.0 (GCF_000219495.3) 5 NC_016411.2 (43526475..43536040)

    Chromosome 5 - NC_053046.1Genomic Context describing neighboring genes Neighboring gene calcium-dependent protein kinase 26 Neighboring gene uncharacterized LOC11421787 Neighboring gene chloride channel protein CLC-e Neighboring gene protein FAR1-RELATED SEQUENCE 5

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Dual RNA-Seq analysis of Medicago truncatula and the pea powdery mildew Erysiphe pisi uncovers distinct host transcriptional signatures during incompatible and compatible interactions and pathogen effector candidates. Gupta M, et al. Genomics, 2020 May. PMID 31837401
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables pyrimidine nucleotide-sugar transmembrane transporter activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in pyrimidine nucleotide-sugar transmembrane transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in Golgi membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    CMP-sialic acid transporter 4
    Names
    ClC chloride channel family protein
    putative transcription factor MADS-type1 family

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Medicago truncatula Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference MtrunA17r5.0-ANR Primary Assembly

    Genomic

    1. NC_053046.1 Reference MtrunA17r5.0-ANR Primary Assembly

      Range
      44718945..44724283
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_003618081.4 → XP_003618129.1  CMP-sialic acid transporter 4 isoform X1

      See identical proteins and their annotated locations for XP_003618129.1

      UniProtKB/TrEMBL
      G7KFH1, I3SDQ7
      Conserved Domains (1) summary
      pfam04142
      Location:58 → 349
      Nuc_sug_transp; Nucleotide-sugar transporter

    2. XM_039834508.1 → XP_039690442.1  CMP-sialic acid transporter 4 isoform X2

      UniProtKB/TrEMBL
      I3SDQ7
      Conserved Domains (1) summary
      cl23754
      Location:129 → 346
      EamA; EamA-like transporter family
    Nucleotide Protein
    Heading Accession and Version

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