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    LOC11432872 CSC1-like protein At3g21620 [ Medicago truncatula (barrel medic) ]

    Gene ID: 11432872, updated on 7-Dec-2023

    Summary

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    Gene symbol
    LOC11432872
    Gene description
    CSC1-like protein At3g21620
    Locus tag
    MtrunA17_Chr5g0439871
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Medicago truncatula
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; Hologalegina; IRL clade; Trifolieae; Medicago
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    Genomic context

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    See LOC11432872 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    13
    Annotation release Status Assembly Chr Location
    102 current MtrunA17r5.0-ANR (GCF_003473485.1) 5 NC_053046.1 (38616221..38622697)
    101 previous assembly MedtrA17_4.0 (GCF_000219495.3) 5 NC_016411.2 (37417343..37423736)

    Chromosome 5 - NC_053046.1Genomic Context describing neighboring genes Neighboring gene putative F-box protein At3g10430 Neighboring gene receptor-like protein 20 Neighboring gene receptor-like protein 9DC3 Neighboring gene receptor-like protein 7

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Dual RNA-Seq analysis of Medicago truncatula and the pea powdery mildew Erysiphe pisi uncovers distinct host transcriptional signatures during incompatible and compatible interactions and pathogen effector candidates. Gupta M, et al. Genomics, 2020 May. PMID 31837401
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables calcium-activated cation channel activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    CSC1-like protein At3g21620
    Names
    ERD (early-responsive to dehydration stress) family protein
    putative calcium-dependent channel, 7TM region phosphate

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Medicago truncatula Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference MtrunA17r5.0-ANR Primary Assembly

    Genomic

    1. NC_053046.1 Reference MtrunA17r5.0-ANR Primary Assembly

      Range
      38616221..38622697
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_003616949.4 → XP_003616997.1  CSC1-like protein At3g21620

      See identical proteins and their annotated locations for XP_003616997.1

      UniProtKB/TrEMBL
      G7KCP6
      Conserved Domains (3) summary
      pfam02714
      Location:370 → 641
      RSN1_7TM; Calcium-dependent channel, 7TM region, putative phosphate
      pfam13967
      Location:6 → 176
      RSN1_TM; Late exocytosis, associated with Golgi transport
      pfam14703
      Location:197 → 359
      PHM7_cyt; Cytosolic domain of 10TM putative phosphate transporter

    RNA

    1. XR_005646307.1 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version

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    Molecular Biology Databases