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    LOC11444387 putative phospholipid-transporting ATPase 9 [ Medicago truncatula (barrel medic) ]

    Gene ID: 11444387, updated on 7-Dec-2023

    Summary

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    Gene symbol
    LOC11444387
    Gene description
    putative phospholipid-transporting ATPase 9
    Locus tag
    MtrunA17_Chr4g0062251
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Medicago truncatula
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; Hologalegina; IRL clade; Trifolieae; Medicago
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    Genomic context

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    See LOC11444387 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    102 current MtrunA17r5.0-ANR (GCF_003473485.1) 4 NC_053045.1 (54078601..54084153, complement)
    101 previous assembly MedtrA17_4.0 (GCF_000219495.3) 4 NC_016410.2 (46049200..46054758, complement)

    Chromosome 4 - NC_053045.1Genomic Context describing neighboring genes Neighboring gene probable calcium-binding protein CML15 Neighboring gene eukaryotic translation initiation factor 5A-3 Neighboring gene G patch domain-containing protein TGH Neighboring gene protein Dr1 homolog

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Dual RNA-Seq analysis of Medicago truncatula and the pea powdery mildew Erysiphe pisi uncovers distinct host transcriptional signatures during incompatible and compatible interactions and pathogen effector candidates. Gupta M, et al. Genomics, 2020 May. PMID 31837401
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables ATP hydrolysis activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables ATPase-coupled intramembrane lipid transporter activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables magnesium ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in phospholipid translocation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    putative phospholipid-transporting ATPase 9
    Names
    phospholipid-transporting ATPase-like protein
    putative phospholipid-translocating ATPase

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Medicago truncatula Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference MtrunA17r5.0-ANR Primary Assembly

    Genomic

    1. NC_053045.1 Reference MtrunA17r5.0-ANR Primary Assembly

      Range
      54078601..54084153 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_003609094.4 → XP_003609142.1  putative phospholipid-transporting ATPase 9

      See identical proteins and their annotated locations for XP_003609142.1

      UniProtKB/TrEMBL
      G7JT17
      Conserved Domains (1) summary
      TIGR01652
      Location:56 → 1149
      ATPase-Plipid; phospholipid-translocating P-type ATPase, flippase
    Nucleotide Protein
    Heading Accession and Version

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