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    LOC11409342 protein LOL1 [ Medicago truncatula (barrel medic) ]

    Gene ID: 11409342, updated on 18-Aug-2023

    Summary

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    Gene symbol
    LOC11409342
    Gene description
    protein LOL1
    Locus tag
    MtrunA17_Chr4g0054701
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Medicago truncatula
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; Hologalegina; IRL clade; Trifolieae; Medicago
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    Genomic context

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    See LOC11409342 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    102 current MtrunA17r5.0-ANR (GCF_003473485.1) 4 NC_053045.1 (48510436..48512678, complement)
    101 previous assembly MedtrA17_4.0 (GCF_000219495.3) 4 NC_016410.2 (40584521..40586743, complement)

    Chromosome 4 - NC_053045.1Genomic Context describing neighboring genes Neighboring gene late embryogenesis abundant protein 6 Neighboring gene ferredoxin C 2, chloroplastic Neighboring gene eyes absent homolog Neighboring gene plant intracellular Ras-group-related LRR protein 5-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Dual RNA-Seq analysis of Medicago truncatula and the pea powdery mildew Erysiphe pisi uncovers distinct host transcriptional signatures during incompatible and compatible interactions and pathogen effector candidates. Gupta M, et al. Genomics, 2020 May. PMID 31837401

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    protein LOL1
    Names
    LSD1-type zinc finger protein
    putative transcription factor Znf-LSD family

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Medicago truncatula Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference MtrunA17r5.0-ANR Primary Assembly

    Genomic

    1. NC_053045.1 Reference MtrunA17r5.0-ANR Primary Assembly

      Range
      48510436..48512678 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_003608574.4 → XP_003608622.1  protein LOL1

      See identical proteins and their annotated locations for XP_003608622.1

      UniProtKB/TrEMBL
      A0A072UPD4, B7FMB3
      Conserved Domains (1) summary
      pfam06943
      Location:75 → 99
      zf-LSD1; LSD1 zinc finger
    Nucleotide Protein
    Heading Accession and Version

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