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    LOC11443944 DNA repair protein RAD16 [ Medicago truncatula (barrel medic) ]

    Gene ID: 11443944, updated on 7-Dec-2023

    Summary

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    Gene symbol
    LOC11443944
    Gene description
    DNA repair protein RAD16
    Locus tag
    MtrunA17_Chr4g0024921
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Medicago truncatula
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; Hologalegina; IRL clade; Trifolieae; Medicago
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    Genomic context

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    See LOC11443944 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    17
    Annotation release Status Assembly Chr Location
    102 current MtrunA17r5.0-ANR (GCF_003473485.1) 4 NC_053045.1 (25768983..25777694)
    101 previous assembly MedtrA17_4.0 (GCF_000219495.3) 4 NC_016410.2 (17406807..17415518)

    Chromosome 4 - NC_053045.1Genomic Context describing neighboring genes Neighboring gene glycine-rich cell wall structural protein 1 Neighboring gene glycine-rich cell wall structural protein 1 Neighboring gene B-cell receptor-associated protein 31 Neighboring gene dirigent protein 2

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Dual RNA-Seq analysis of Medicago truncatula and the pea powdery mildew Erysiphe pisi uncovers distinct host transcriptional signatures during incompatible and compatible interactions and pathogen effector candidates. Gupta M, et al. Genomics, 2020 May. PMID 31837401
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables ATP-dependent chromatin remodeler activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    DNA repair protein RAD16
    Names
    RING/U-box helicase
    putative DNA helicase chromatin remodeling SNF2 family

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Medicago truncatula Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference MtrunA17r5.0-ANR Primary Assembly

    Genomic

    1. NC_053045.1 Reference MtrunA17r5.0-ANR Primary Assembly

      Range
      25768983..25777694
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_003605907.2 → XP_003605955.1  DNA repair protein RAD16

      See identical proteins and their annotated locations for XP_003605955.1

      UniProtKB/TrEMBL
      G7JEP7
      Conserved Domains (1) summary
      COG0553
      Location:229 → 933
      HepA; Superfamily II DNA or RNA helicase, SNF2 family [Transcription, Replication, recombination and repair]

    RNA

    1. XR_003011442.2 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version

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