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    LOC11426822 ubiquitin-fold modifier-conjugating enzyme 1 [ Medicago truncatula (barrel medic) ]

    Gene ID: 11426822, updated on 7-Dec-2023

    Summary

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    Gene symbol
    LOC11426822
    Gene description
    ubiquitin-fold modifier-conjugating enzyme 1
    Locus tag
    MtrunA17_Chr3g0141001
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Medicago truncatula
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; Hologalegina; IRL clade; Trifolieae; Medicago
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    Genomic context

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    See LOC11426822 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    102 current MtrunA17r5.0-ANR (GCF_003473485.1) 3 NC_053044.1 (55335855..55339717)
    101 previous assembly MedtrA17_4.0 (GCF_000219495.3) 3 NC_016409.2 (51928148..51932045)

    Chromosome 3 - NC_053044.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC25490161 Neighboring gene uncharacterized LOC112420426 Neighboring gene phosphoenolpyruvate carboxykinase (ATP) 1 Neighboring gene serpin-ZX-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Dual RNA-Seq analysis of Medicago truncatula and the pea powdery mildew Erysiphe pisi uncovers distinct host transcriptional signatures during incompatible and compatible interactions and pathogen effector candidates. Gupta M, et al. Genomics, 2020 May. PMID 31837401
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables UFM1 conjugating enzyme activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in protein K69-linked ufmylation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    ubiquitin-fold modifier-conjugating enzyme 1
    Names
    putative ubiquitin-fold modifier-conjugating enzyme 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Medicago truncatula Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference MtrunA17r5.0-ANR Primary Assembly

    Genomic

    1. NC_053044.1 Reference MtrunA17r5.0-ANR Primary Assembly

      Range
      55335855..55339717
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_024778515.2 → XP_024634283.1  ubiquitin-fold modifier-conjugating enzyme 1

      UniProtKB/TrEMBL
      G7J434, I3SXC5, I3T975
      Conserved Domains (1) summary
      pfam08694
      Location:8 → 163
      UFC1; Ubiquitin-fold modifier-conjugating enzyme 1

    2. XM_003603634.4 → XP_003603682.1  ubiquitin-fold modifier-conjugating enzyme 1

      See identical proteins and their annotated locations for XP_003603682.1

      UniProtKB/TrEMBL
      G7J434, I3SXC5, I3T975
      Conserved Domains (1) summary
      pfam08694
      Location:8 → 163
      UFC1; Ubiquitin-fold modifier-conjugating enzyme 1

    3. XM_024778516.2 → XP_024634284.1  ubiquitin-fold modifier-conjugating enzyme 1

      UniProtKB/TrEMBL
      G7J434, I3SXC5, I3T975
      Conserved Domains (1) summary
      pfam08694
      Location:8 → 163
      UFC1; Ubiquitin-fold modifier-conjugating enzyme 1
    Nucleotide Protein
    Heading Accession and Version

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