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    LOC11406905 pyruvate dehydrogenase (acetyl-transferring) kinase, mitochondrial [ Medicago truncatula (barrel medic) ]

    Gene ID: 11406905, updated on 7-Dec-2023

    Summary

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    Gene symbol
    LOC11406905
    Gene description
    pyruvate dehydrogenase (acetyl-transferring) kinase, mitochondrial
    Locus tag
    MtrunA17_Chr2g0302461
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Medicago truncatula
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; Hologalegina; IRL clade; Trifolieae; Medicago
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    Genomic context

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    See LOC11406905 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    102 current MtrunA17r5.0-ANR (GCF_003473485.1) 2 NC_053043.1 (19988405..19992764, complement)
    101 previous assembly MedtrA17_4.0 (GCF_000219495.3) 2 NC_016408.2 (19977197..19981551, complement)

    Chromosome 2 - NC_053043.1Genomic Context describing neighboring genes Neighboring gene CBL-interacting serine/threonine-protein kinase 1 Neighboring gene uncharacterized LOC112419304 Neighboring gene protein FAR1-RELATED SEQUENCE 5-like Neighboring gene spermidine hydroxycinnamoyl transferase-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Dual RNA-Seq analysis of Medicago truncatula and the pea powdery mildew Erysiphe pisi uncovers distinct host transcriptional signatures during incompatible and compatible interactions and pathogen effector candidates. Gupta M, et al. Genomics, 2020 May. PMID 31837401
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables pyruvate dehydrogenase (acetyl-transferring) kinase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in protein phosphorylation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of glucose metabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in mitochondrion IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    pyruvate dehydrogenase (acetyl-transferring) kinase, mitochondrial
    Names
    putative [Pyruvate dehydrogenase (acetyl-transferring)] kinase

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Medicago truncatula Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference MtrunA17r5.0-ANR Primary Assembly

    Genomic

    1. NC_053043.1 Reference MtrunA17r5.0-ANR Primary Assembly

      Range
      19988405..19992764 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_003595392.4 → XP_003595440.1  pyruvate dehydrogenase (acetyl-transferring) kinase, mitochondrial isoform X1

      See identical proteins and their annotated locations for XP_003595440.1

      UniProtKB/TrEMBL
      A0A072V7T7, G7ISS5
      Conserved Domains (2) summary
      smart00387
      Location:233 → 358
      HATPase_c; Histidine kinase-like ATPases
      pfam10436
      Location:28 → 189
      BCDHK_Adom3; Mitochondrial branched-chain alpha-ketoacid dehydrogenase kinase

    2. XM_039830523.1 → XP_039686457.1  pyruvate dehydrogenase (acetyl-transferring) kinase, mitochondrial isoform X2

      UniProtKB/TrEMBL
      A0A072V6L2, A0A072V7A0
      Conserved Domains (2) summary
      cd16929
      Location:111 → 277
      HATPase_PDK-like; Histidine kinase-like ATPase domain of pyruvate dehydrogenase kinase, branched-chain alpha-ketoacid dehydrogenase kinase and related domains
      pfam10436
      Location:1 → 107
      BCDHK_Adom3; Mitochondrial branched-chain alpha-ketoacid dehydrogenase kinase
    Nucleotide Protein
    Heading Accession and Version

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