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    LOC11434331 aminotransferase ALD1, chloroplastic [ Medicago truncatula (barrel medic) ]

    Gene ID: 11434331, updated on 7-Dec-2023

    Summary

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    Gene symbol
    LOC11434331
    Gene description
    aminotransferase ALD1, chloroplastic
    Locus tag
    MtrunA17_Chr2g0278911
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Medicago truncatula
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; Hologalegina; IRL clade; Trifolieae; Medicago
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    Genomic context

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    See LOC11434331 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    102 current MtrunA17r5.0-ANR (GCF_003473485.1) 2 NC_053043.1 (1481120..1485077)
    101 previous assembly MedtrA17_4.0 (GCF_000219495.3) 2 NC_016408.2 (1471762..1475702)

    Chromosome 2 - NC_053043.1Genomic Context describing neighboring genes Neighboring gene BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 Neighboring gene BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 Neighboring gene protein RAE1 Neighboring gene F-box/kelch-repeat protein At1g22040 Neighboring gene high affinity sulfate transporter 2

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Dual RNA-Seq analysis of Medicago truncatula and the pea powdery mildew Erysiphe pisi uncovers distinct host transcriptional signatures during incompatible and compatible interactions and pathogen effector candidates. Gupta M, et al. Genomics, 2020 May. PMID 31837401
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables L-lysine alpha-aminotransferase IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables pyridoxal phosphate binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in L-pipecolic acid biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in systemic acquired resistance, salicylic acid mediated signaling pathway IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in chloroplast IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    aminotransferase ALD1, chloroplastic
    Names
    LL-diaminopimelate aminotransferase
    putative LL-diaminopimelate aminotransferase

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Medicago truncatula Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference MtrunA17r5.0-ANR Primary Assembly

    Genomic

    1. NC_053043.1 Reference MtrunA17r5.0-ANR Primary Assembly

      Range
      1481120..1485077
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_003593114.3 → XP_003593162.1  aminotransferase ALD1, chloroplastic

      See identical proteins and their annotated locations for XP_003593162.1

      UniProtKB/TrEMBL
      G7INS4
      Conserved Domains (1) summary
      cl27741
      Location:40 → 439
      Aminotran_1_2; Aminotransferase class I and II
    Nucleotide Protein
    Heading Accession and Version

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