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    LOC100826354 serine/threonine-protein kinase EDR1 [ Brachypodium distachyon (stiff brome) ]

    Gene ID: 100826354, updated on 9-Nov-2023

    Summary

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    Gene symbol
    LOC100826354
    Gene description
    serine/threonine-protein kinase EDR1
    Locus tag
    BRADI_3g09170v3
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Brachypodium distachyon
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Pooideae; Stipodae; Brachypodieae; Brachypodium
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    Genomic context

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    See LOC100826354 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    17
    Annotation release Status Assembly Chr Location
    103 current Brachypodium_distachyon_v3.0 (GCF_000005505.3) 3 NC_016133.3 (7294970..7310076)
    102 previous assembly Brachypodium_distachyon_v2.0 (GCF_000005505.2) 3 NC_016133.2 (7281371..7296511)

    Chromosome 3 - NC_016133.3Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC100824303 Neighboring gene uncharacterized LOC104583488 Neighboring gene hydroquinone glucosyltransferase Neighboring gene hydroquinone glucosyltransferase

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein kinase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in protein phosphorylation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    serine/threonine-protein kinase EDR1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Brachypodium distachyon Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Brachypodium_distachyon_v3.0 Primary Assembly

    Genomic

    1. NC_016133.3 Reference Brachypodium_distachyon_v3.0 Primary Assembly

      Range
      7294970..7310076
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_014901223.2 → XP_014756709.1  serine/threonine-protein kinase EDR1 isoform X1

      Conserved Domains (3) summary
      cd13999
      Location:543 → 785
      STKc_MAP3K-like; Catalytic domain of Mitogen-Activated Protein Kinase (MAPK) Kinase Kinase-like Serine/Threonine kinases
      pfam07714
      Location:537 → 785
      Pkinase_Tyr; Protein tyrosine kinase
      pfam14381
      Location:59 → 253
      EDR1; Ethylene-responsive protein kinase Le-CTR1

    2. XM_003571895.4 → XP_003571943.1  serine/threonine-protein kinase EDR1 isoform X2

      UniProtKB/TrEMBL
      I1HZ57
      Conserved Domains (3) summary
      cd13999
      Location:542 → 784
      STKc_MAP3K-like; Catalytic domain of Mitogen-Activated Protein Kinase (MAPK) Kinase Kinase-like Serine/Threonine kinases
      pfam07714
      Location:536 → 784
      Pkinase_Tyr; Protein tyrosine kinase
      pfam14381
      Location:59 → 253
      EDR1; Ethylene-responsive protein kinase Le-CTR1
    Nucleotide Protein Strain
    Heading Accession and Version

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