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    LOC100834783 WD repeat-containing protein 53 [ Brachypodium distachyon (stiff brome) ]

    Gene ID: 100834783, updated on 9-Nov-2023

    Summary

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    Gene symbol
    LOC100834783
    Gene description
    WD repeat-containing protein 53
    Locus tag
    BRADI_2g06440v3
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Brachypodium distachyon
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Pooideae; Stipodae; Brachypodieae; Brachypodium
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    Genomic context

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    See LOC100834783 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    103 current Brachypodium_distachyon_v3.0 (GCF_000005505.3) 2 NC_016132.3 (4943280..4948011)
    102 previous assembly Brachypodium_distachyon_v2.0 (GCF_000005505.2) 2 NC_016132.2 (4942780..4947495)

    Chromosome 2 - NC_016132.3Genomic Context describing neighboring genes Neighboring gene protein IWS1 homolog A Neighboring gene uncharacterized LOC100832632 Neighboring gene pentatricopeptide repeat-containing protein DOT4, chloroplastic Neighboring gene uncharacterized LOC100838460

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    WD repeat-containing protein 53

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Brachypodium distachyon Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Brachypodium_distachyon_v3.0 Primary Assembly

    Genomic

    1. NC_016132.3 Reference Brachypodium_distachyon_v3.0 Primary Assembly

      Range
      4943280..4948011
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      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_003565190.4 → XP_003565238.1  WD repeat-containing protein 53

      UniProtKB/TrEMBL
      A0A0Q3MFL9, I1HD41
      Conserved Domains (4) summary
      COG2319
      Location:11 → 332
      WD40; WD40 repeat [General function prediction only]
      pfam00400
      Location:292 → 329
      WD40; WD domain, G-beta repeat
      sd00039
      Location:27 → 65
      7WD40; WD40 repeat [structural motif]
      cl02567
      Location:12 → 194
      WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...

    RNA

    1. XR_001406139.2 RNA Sequence

    2. XR_001406140.2 RNA Sequence

    Nucleotide Protein Strain
    Heading Accession and Version

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