U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from Protein

    • Showing Current items.

    LOC100790116 exosome complex exonuclease RRP46 homolog [ Glycine max (soybean) ]

    Gene ID: 100790116, updated on 11-Apr-2024

    Summary

    Go to the top of the page Help
    Gene symbol
    LOC100790116
    Gene description
    exosome complex exonuclease RRP46 homolog
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Glycine max
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Glycine; Glycine subgen. Soja
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See LOC100790116 in Genome Data Viewer
    Location:
    chromosome: 14
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    104 current Glycine_max_v4.0 (GCF_000004515.6) 14 NC_038250.2 (11891854..11894680)
    103 previous assembly Glycine_max_v2.1 (GCF_000004515.5) 14 NC_038250.1 (11640159..11643063)

    Chromosome 14 - NC_038250.2Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC102668808 Neighboring gene rop guanine nucleotide exchange factor 2 Neighboring gene serine/threonine-protein kinase-like protein ACR4 Neighboring gene zinc-regulated protein 8-like

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in U4 snRNA 3'-end processing IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in nuclear mRNA surveillance IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in poly(A)-dependent snoRNA 3'-end processing IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in rRNA catabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of cytoplasmic exosome (RNase complex) IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of nuclear exosome (RNase complex) IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleolus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    exosome complex exonuclease RRP46 homolog

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: Glycine max Annotation Release 104 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Glycine_max_v4.0 Primary Assembly

    Genomic

    1. NC_038250.2 Reference Glycine_max_v4.0 Primary Assembly

      Range
      11891854..11894680
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_003545379.4 → XP_003545427.1  exosome complex exonuclease RRP46 homolog

      UniProtKB/TrEMBL
      I1M9D1
      Conserved Domains (1) summary
      cd11372
      Location:14 → 221
      RNase_PH_RRP46; RRP46 subunit of eukaryotic exosome
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.