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    LOC100788400 SCY1-like protein 2 [ Glycine max (soybean) ]

    Gene ID: 100788400, updated on 7-Dec-2023

    Summary

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    Gene symbol
    LOC100788400
    Gene description
    SCY1-like protein 2
    Locus tag
    GLYMA_09G002400v4
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Glycine max
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Glycine; Glycine subgen. Soja
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    Genomic context

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    See LOC100788400 in Genome Data Viewer
    Location:
    chromosome: 9
    Exon count:
    15
    Annotation release Status Assembly Chr Location
    104 current Glycine_max_v4.0 (GCF_000004515.6) 9 NC_038245.2 (201908..212383)
    103 previous assembly Glycine_max_v2.1 (GCF_000004515.5) 9 NC_038245.1 (201911..212362)

    Chromosome 9 - NC_038245.2Genomic Context describing neighboring genes Neighboring gene SUN domain-containing protein 3 Neighboring gene molybdenum cofactor sulfurase Neighboring gene CIII PRX family protein PRX17-like protein Neighboring gene ethylene receptor

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein kinase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in protein phosphorylation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    SCY1-like protein 2

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Glycine max Annotation Release 104 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Glycine_max_v4.0 Primary Assembly

    Genomic

    1. NC_038245.2 Reference Glycine_max_v4.0 Primary Assembly

      Range
      201908..212383
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_003534389.5 → XP_003534437.1  SCY1-like protein 2 isoform X1

      See identical proteins and their annotated locations for XP_003534437.1

      UniProtKB/TrEMBL
      I1KZR6
      Conserved Domains (2) summary
      cd14011
      Location:45 → 346
      PK_SCY1_like; Pseudokinase domain of Scy1-like proteins
      sd00044
      Location:466 → 494
      HEAT; HEAT repeat [structural motif]

    2. XM_006586680.4 → XP_006586743.1  SCY1-like protein 2 isoform X2

      UniProtKB/TrEMBL
      A0A0R0I1H9
      Conserved Domains (2) summary
      sd00044
      Location:319 → 347
      HEAT; HEAT repeat [structural motif]
      cl21453
      Location:2 → 199
      PKc_like; Protein Kinases, catalytic domain

    RNA

    1. XR_003262739.2 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version

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