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    LOC100818633 probable prefoldin subunit 2 [ Glycine max (soybean) ]

    Gene ID: 100818633, updated on 7-Dec-2023

    Summary

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    Gene symbol
    LOC100818633
    Gene description
    probable prefoldin subunit 2
    Locus tag
    GLYMA_06G316000v4
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Glycine max
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Glycine; Glycine subgen. Soja
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    Genomic context

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    See LOC100818633 in Genome Data Viewer
    Location:
    chromosome: 6
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    104 current Glycine_max_v4.0 (GCF_000004515.6) 6 NC_038242.2 (50026931..50029340, complement)
    103 previous assembly Glycine_max_v2.1 (GCF_000004515.5) 6 NC_038242.1 (50497162..50499564, complement)

    Chromosome 6 - NC_038242.2Genomic Context describing neighboring genes Neighboring gene inactive protein RESTRICTED TEV MOVEMENT 2 Neighboring gene protein RBL Neighboring gene bifunctional protein FolD 1, mitochondrial Neighboring gene inactive protein RESTRICTED TEV MOVEMENT 2

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein folding chaperone IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables unfolded protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in protein folding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of prefoldin complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    probable prefoldin subunit 2

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Glycine max Annotation Release 104 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Glycine_max_v4.0 Primary Assembly

    Genomic

    1. NC_038242.2 Reference Glycine_max_v4.0 Primary Assembly

      Range
      50026931..50029340 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006582341.4 → XP_006582404.1  probable prefoldin subunit 2

      See identical proteins and their annotated locations for XP_006582404.1

      UniProtKB/TrEMBL
      C6TMV2, I1KFP3
      Conserved Domains (1) summary
      pfam01920
      Location:18 → 118
      Prefoldin_2; Prefoldin subunit

    2. XM_003527492.5 → XP_003527540.1  probable prefoldin subunit 2

      See identical proteins and their annotated locations for XP_003527540.1

      UniProtKB/TrEMBL
      C6TMV2, I1KFP3
      Conserved Domains (1) summary
      pfam01920
      Location:18 → 118
      Prefoldin_2; Prefoldin subunit

    3. XM_026129029.2 → XP_025984814.1  probable prefoldin subunit 2

      UniProtKB/TrEMBL
      C6TMV2, I1KFP3
      Conserved Domains (1) summary
      pfam01920
      Location:18 → 118
      Prefoldin_2; Prefoldin subunit
    Nucleotide Protein
    Heading Accession and Version

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