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    LOC100801918 alcohol dehydrogenase 1 [ Glycine max (soybean) ]

    Gene ID: 100801918, updated on 18-Sep-2024

    Summary

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    Gene symbol
    LOC100801918
    Gene description
    alcohol dehydrogenase 1
    Locus tag
    GLYMA_06G122600v4
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Glycine max
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Glycine; Glycine subgen. Soja
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    Genomic context

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    See LOC100801918 in Genome Data Viewer
    Location:
    chromosome: 6
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    104 current Glycine_max_v4.0 (GCF_000004515.6) 6 NC_038242.2 (9959477..9962676)
    103 previous assembly Glycine_max_v2.1 (GCF_000004515.5) 6 NC_038242.1 (9998514..10001599)

    Chromosome 6 - NC_038242.2Genomic Context describing neighboring genes Neighboring gene psbP domain-containing protein 4, chloroplastic Neighboring gene putative transcription elongation factor SPT5 homolog 1 Neighboring gene protein trichome berefringence-like 7 Neighboring gene serine carboxypeptidase-like 42

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables S-(hydroxymethyl)glutathione dehydrogenase [NAD(P)+] activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in formaldehyde catabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytosol IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    alcohol dehydrogenase 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Glycine max Annotation Release 104 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Glycine_max_v4.0 Primary Assembly

    Genomic

    1. NC_038242.2 Reference Glycine_max_v4.0 Primary Assembly

      Range
      9959477..9962676
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_003526625.5 → XP_003526673.1  alcohol dehydrogenase 1 isoform X2

      See identical proteins and their annotated locations for XP_003526673.1

      UniProtKB/TrEMBL
      A0A0R0JL19, A0A0R0JM61
      Conserved Domains (1) summary
      cd08301
      Location:10 → 378
      alcohol_DH_plants; Plant alcohol dehydrogenase

    2. XM_041016418.1 → XP_040872352.1  alcohol dehydrogenase 1 isoform X1

      UniProtKB/TrEMBL
      A0A0R0JM61
      Conserved Domains (1) summary
      cd08301
      Location:10 → 414
      alcohol_DH_plants; Plant alcohol dehydrogenase
    Nucleotide Protein
    Heading Accession and Version

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