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    transmembrane protein (Protein of unknown function DUF2359, transmembrane) [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 838925, updated on 18-Sep-2024

    Summary

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    Official Full Name
    transmembrane protein (Protein of unknown function DUF2359, transmembrane)
    Primary source
    TAIR:AT1G23170
    Locus tag
    AT1G23170
    See related
    Araport:AT1G23170
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    T26J12.6; T26J12_6
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    10
    Sequence:
    Chromosome: 1; NC_003070.9 (8212556..8215807)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene Auxin-responsive GH3 family protein Neighboring gene ARM repeat superfamily protein Neighboring gene Phosphoglucomutase/phosphomannomutase family protein Neighboring gene Plant invertase/pectin methylesterase inhibitor superfamily

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Novel Aquaporin Regulatory Mechanisms Revealed by Interactomics. Bellati J, et al. Mol Cell Proteomics, 2016 Nov. PMID 27609422, Free PMC Article
    2. Putative glycosyltransferases and other plant Golgi apparatus proteins are revealed by LOPIT proteomics. Nikolovski N, et al. Plant Physiol, 2012 Oct. PMID 22923678, Free PMC Article
    3. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_102165.1

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  
    located_in plasma membrane HDA PubMed 

    General protein information

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    Preferred Names
    transmembrane protein (Protein of unknown function DUF2359, transmembrane)
    NP_001185070.1
    • Protein of unknown function DUF2359, transmembrane; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF2359, transmembrane (InterPro:IPR019308); BEST Arabidopsis thaliana protein match is: Protein of unknown function DUF2359, transmembrane (TAIR:AT1G70770.2).
    NP_173730.1
    • Protein of unknown function DUF2359, transmembrane; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: membrane; EXPRESSED IN: leaf; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF2359, transmembrane (InterPro:IPR019308); BEST Arabidopsis thaliana protein match is: Protein of unknown function DUF2359, transmembrane (TAIR:AT1G70770.2); Has 178 Blast hits to 160 proteins in 33 species: Archae - 0; Bacteria - 0; Metazoa - 70; Fungi - 0; Plants - 108; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      8212556..8215807
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001198141.1 → NP_001185070.1  transmembrane protein (Protein of unknown function DUF2359, transmembrane) [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001185070.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178WND7, A0A5S9VLS0, A0A654EDW3, F4I4N4
      Conserved Domains (1) summary
      pfam10151
      Location:287 → 560
      TMEM214; C-terminal, caspase 4 activator

    2. NM_102165.1 → NP_173730.1  transmembrane protein (Protein of unknown function DUF2359, transmembrane) [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_173730.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178WND7, A0A5S9VLS0, F4I4N5
      Conserved Domains (1) summary
      pfam10151
      Location:242 → 515
      DUF2359; uncharacterized conserved protein (DUF2359)
    Nucleotide Protein
    Heading Accession and Version

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