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    ELKS/Rab6-interacting/CAST family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 838603, updated on 18-Sep-2024

    Summary

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    Official Full Name
    ELKS/Rab6-interacting/CAST family protein
    Primary source
    TAIR:AT1G03290
    Locus tag
    AT1G03290
    See related
    Araport:AT1G03290
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F15K9.11; F15K9_11
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    9
    Sequence:
    Chromosome: 1; NC_003070.9 (807361..813216)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene CBS domain protein with a domain protein (DUF21) Neighboring gene Transcription factor TFIIE, alpha subunit Neighboring gene agenet domain protein (DOMAIN OF UNKNOWN FUNCTION 724 1) Neighboring gene debranching enzyme 1 Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Characterization of a phosphatase 2C protein as an interacting partner of the histone acetyltransferase GCN5 in Arabidopsis. Servet C, et al. Biochim Biophys Acta, 2008 Jun-Jul. PMID 18498779
    2. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_001197969.2
    NM_001331401.1
    NM_001331402.1
    NM_001331403.1
    NM_001331404.1
    NM_100211.4

    Gene Ontology Provided by TAIR

    Component Evidence Code Pubs
    located_in extracellular region ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    ELKS/Rab6-interacting/CAST family protein
    NP_001184898.1
    • unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G02880.2).
    NP_171828.1
    • unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G02880.2); Has 13587 Blast hits to 10183 proteins in 1114 species: Archae - 257; Bacteria - 2402; Metazoa - 5637; Fungi - 960; Plants - 675; Viruses - 54; Other Eukaryotes - 3602 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      807361..813216
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001197969.2 → NP_001184898.1  ELKS/Rab6-interacting/CAST family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001184898.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178WKZ9, A0A384L3Y1, A0A5S9SCG8, Q9ZVT0
      Conserved Domains (1) summary
      NF033930
      Location:292 → 486
      pneumo_PspA; pneumococcal surface protein A

    2. NM_001331401.1 → NP_001322179.1  ELKS/Rab6-interacting/CAST family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178WKZ9, A0A384L3Y1, A0A5S9SCG8, Q9ZVT0
      Conserved Domains (1) summary
      NF033930
      Location:292 → 486
      pneumo_PspA; pneumococcal surface protein A

    3. NM_001331402.1 → NP_001322180.1  ELKS/Rab6-interacting/CAST family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178WKZ9, A0A384L3Y1, A0A5S9SCG8, Q9ZVT0
      Conserved Domains (1) summary
      NF033930
      Location:292 → 486
      pneumo_PspA; pneumococcal surface protein A

    4. NM_100211.4 → NP_171828.1  ELKS/Rab6-interacting/CAST family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_171828.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178WKZ9, A0A384L3Y1, A0A5S9SCG8, Q9ZVT0
      Conserved Domains (1) summary
      NF033930
      Location:292 → 486
      pneumo_PspA; pneumococcal surface protein A

    5. NM_001331403.1 → NP_001322181.1  ELKS/Rab6-interacting/CAST family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8AT68, A0A5S9SCG8

    6. NM_001331404.1 → NP_001322182.1  ELKS/Rab6-interacting/CAST family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8AT82, A0A5S9SCG8
    Nucleotide Protein
    Heading Accession and Version

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