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    LETM1-like protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 820329, updated on 18-Sep-2024

    Summary

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    Official Full Name
    LETM1-like protein
    Primary source
    TAIR:AT3G11560
    Locus tag
    AT3G11560
    See related
    Araport:AT3G11560
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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    Genomic context

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    Location:
    chromosome: 3
    Exon count:
    18
    Sequence:
    Chromosome: 3; NC_003074.8 (3639412..3646061)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene Tetratricopeptide repeat (TPR)-like superfamily protein Neighboring gene Uncharacterized protein family (UPF0497) Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene TRICHOME BIREFRINGENCE-LIKE 8 Neighboring gene AP2/B3-like transcriptional factor family protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Proteomic study of the Arabidopsis thaliana chloroplastic envelope membrane utilizing alternatives to traditional two-dimensional electrophoresis. Froehlich JE, et al. J Proteome Res, 2003 Jul-Aug. PMID 12938931
    2. AT_CHLORO, a comprehensive chloroplast proteome database with subplastidial localization and curated information on envelope proteins. Ferro M, et al. Mol Cell Proteomics, 2010 Jun. PMID 20061580, Free PMC Article
    3. Sorting signals, N-terminal modifications and abundance of the chloroplast proteome. Zybailov B, et al. PLoS One, 2008 Apr 23. PMID 18431481, Free PMC Article
    4. Global Analysis of Membrane-associated Protein Oligomerization Using Protein Correlation Profiling. McBride Z, et al. Mol Cell Proteomics, 2017 Nov. PMID 28887381, Free PMC Article
    5. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_001084667.1
    NM_001337937.1
    NM_111989.4
    NM_180668.3
    NM_180669.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in chloroplast HDA PubMed 
    located_in chloroplast envelope HDA PubMed 
    located_in cytosol HDA PubMed 
    located_in mitochondrial inner membrane IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in mitochondrion ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    LETM1-like protein
    NP_001078136.1
    • LETM1-like protein; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: LETM1-like (InterPro:IPR011685); BEST Arabidopsis thaliana protein match is: LETM1-like protein (TAIR:AT5G06220.2); Has 461 Blast hits to 445 proteins in 157 species: Archae - 0; Bacteria - 8; Metazoa - 136; Fungi - 162; Plants - 104; Viruses - 0; Other Eukaryotes - 51 (source: NCBI BLink).
    NP_187763.3
    • LETM1-like protein; LOCATED IN: chloroplast, chloroplast envelope; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: LETM1-like (InterPro:IPR011685); BEST Arabidopsis thaliana protein match is: LETM1-like protein (TAIR:AT5G06220.2); Has 461 Blast hits to 445 proteins in 157 species: Archae - 0; Bacteria - 8; Metazoa - 136; Fungi - 162; Plants - 104; Viruses - 0; Other Eukaryotes - 51 (source: NCBI BLink).
    NP_850999.1
    • LETM1-like protein; LOCATED IN: chloroplast, chloroplast envelope; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: LETM1-like protein (TAIR:AT5G06220.2); Has 56 Blast hits to 54 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 56; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
    NP_851000.1
    • LETM1-like protein; LOCATED IN: chloroplast, chloroplast envelope; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: LETM1-like (InterPro:IPR011685); BEST Arabidopsis thaliana protein match is: LETM1-like protein (TAIR:AT5G06220.2); Has 461 Blast hits to 445 proteins in 157 species: Archae - 0; Bacteria - 8; Metazoa - 136; Fungi - 162; Plants - 104; Viruses - 0; Other Eukaryotes - 51 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      3639412..3646061
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_180669.3 → NP_851000.1  LETM1-like protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_851000.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A5S9XB36, A0A654F645, Q8H0W4
      Conserved Domains (1) summary
      pfam07766
      Location:760 → 857
      LETM1; LETM1-like protein

    2. NM_111989.4 → NP_187763.3  LETM1-like protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_187763.3

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A5S9XB36, A0A654F645, Q8H0W4
      Conserved Domains (1) summary
      pfam07766
      Location:760 → 857
      LETM1; LETM1-like protein

    3. NM_001084667.1 → NP_001078136.1  LETM1-like protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001078136.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A5S9XB36, A0A654F645, Q8H0W4
      Conserved Domains (1) summary
      pfam07766
      Location:760 → 857
      LETM1; LETM1-like protein

    4. NM_001337937.1 → NP_001326547.1  LETM1-like protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q8VYL0

    5. NM_180668.3 → NP_850999.1  LETM1-like protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_850999.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q8VYL0
      Conserved Domains (1) summary
      COG0419
      Location:505 → 609
      SbcC; DNA repair exonuclease SbcCD ATPase subunit [Replication, recombination and repair]
    Nucleotide Protein
    Heading Accession and Version

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