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    TBL9 TRICHOME BIREFRINGENCE-LIKE 9 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 830510, updated on 18-Sep-2024

    Summary

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    Official Symbol
    TBL9
    Official Full Name
    TRICHOME BIREFRINGENCE-LIKE 9
    Primary source
    TAIR:AT5G06230
    Locus tag
    AT5G06230
    See related
    Araport:AT5G06230
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    MBL20.11; MBL20_11; TRICHOME BIREFRINGENCE-LIKE 9
    Summary
    Encodes a member of the TBL (TRICHOME BIREFRINGENCE-LIKE) gene family containing a plant-specific DUF231 (domain of unknown function) domain. TBL gene family has 46 members, two of which (TBR/AT5G06700 and TBL3/AT5G01360) have been shown to be involved in the synthesis and deposition of secondary wall cellulose, presumably by influencing the esterification state of pectic polymers. A nomenclature for this gene family has been proposed (Volker Bischoff & Wolf Scheible, 2010, personal communication).
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    Genomic context

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    See TBL9 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    5
    Sequence:
    Chromosome: 5; NC_003076.8 (1884928..1887175, complement)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene Uncharacterized protein family (UPF0497) Neighboring gene RNA binding (RRM/RBD/RNP motifs) family protein Neighboring gene LETM1-like protein Neighboring gene embryo defective 2735 Neighboring gene ncRNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    NM_001342861.1
    NM_120705.3
    NM_203010.1

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables O-acetyltransferase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in extracellular region ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    TRICHOME BIREFRINGENCE-LIKE 9
    NP_568164.2
    • TRICHOME BIREFRINGENCE-LIKE 9 (TBL9); LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF231, plant (InterPro:IPR004253); BEST Arabidopsis thaliana protein match is: TRICHOME BIREFRINGENCE-LIKE 8 (TAIR:AT3G11570.1); Has 1361 Blast hits to 1339 proteins in 32 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 2; Plants - 1354; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).
    NP_974739.1
    • TRICHOME BIREFRINGENCE-LIKE 9; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF231, plant (InterPro:IPR004253); BEST Arabidopsis thaliana protein match is: TRICHOME BIREFRINGENCE-LIKE 8 (TAIR:AT3G11570.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      1884928..1887175 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_120705.3 → NP_568164.2  TRICHOME BIREFRINGENCE-LIKE 9 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_568164.2

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9ASZ0, Q9FFZ4
      UniProtKB/TrEMBL
      A0A178UJA4, A0A5S9Y1U7, A0A7G2F8R1
      Conserved Domains (2) summary
      pfam13839
      Location:120 → 404
      PC-Esterase; GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p
      pfam14416
      Location:60 → 119
      PMR5N; PMR5 N terminal Domain

    2. NM_203010.1 → NP_974739.1  TRICHOME BIREFRINGENCE-LIKE 9 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_974739.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9FFZ4
      Conserved Domains (2) summary
      pfam13839
      Location:79 → 363
      PC-Esterase; GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p
      pfam14416
      Location:19 → 78
      PMR5N; PMR5 N terminal Domain

    3. NM_001342861.1 → NP_001331517.1  TRICHOME BIREFRINGENCE-LIKE 9 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8BE49
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9FFZ4.1

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