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These reference sequences exist independently of genome builds. Explain
These reference sequences are curated independently of the genome
annotation cycle, so their versions may not match the RefSeq versions in the current
genome build. Identify version mismatches by comparing the version of the RefSeq in
this section to the one reported in Genomic regions,
transcripts, and products above.
mRNA and Protein(s)
-
NM_001206650.2 → NP_001193579.1 pregnancy-specific beta-1-glycoprotein 7 isoform 2
Status: REVIEWED
- Description
- Transcript Variant: This variant (2) lacks an alternate in-frame exon in the 5' coding region, compared to variant 1, resulting in an isoform (2) that is shorter than isoform 1.
- Source sequence(s)
-
AC093055, BC136401, BP321474, BX952498, DB381347, T29414
- Consensus CDS
-
CCDS77310.1
- UniProtKB/TrEMBL
- A0A096LNM5, M0R0B3
- Related
- ENSP00000485117.1, ENST00000623675.3
- Conserved Domains (3) summary
-
- smart00410
Location:217 → 289
- IG_like; Immunoglobulin like
- pfam13895
Location:213 → 291
- Ig_2; Immunoglobulin domain
- cl11960
Location:26 → 114
- Ig; Immunoglobulin domain
-
NM_002783.3 → NP_002774.2 pregnancy-specific beta-1-glycoprotein 7 isoform 1 precursor
Status: REVIEWED
- Description
- Transcript Variant: This variant (1) represents the longer transcript and encodes the longest isoform (1). This version of transcript variant 1 represents the protein-coding minor allele. A second version of transcript variant 1 represents the major allele of this polymorphic locus with a mismatch compared to the reference genome sequence.
- Source sequence(s)
-
AC093055, AL546656, BC030979, BG434892, BX952498, DC380850, T29414, U18467
- UniProtKB/Swiss-Prot
- A0A087WSZ1, Q13046, Q15232
- UniProtKB/TrEMBL
-
A0A087WT09
- Related
- ENSP00000421986.1, ENST00000406070.7
- Conserved Domains (3) summary
-
- pfam13895
Location:335 → 413
- Ig_2; Immunoglobulin domain
- cd05774
Location:36 → 138
- Ig_CEACAM_D1; First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM)
- cl11960
Location:148 → 236
- Ig; Immunoglobulin domain
RNA
-
NR_172123.1 RNA Sequence
Status: REVIEWED
- Description
- Transcript Variant: This variant (1, non-coding) is represented as non-coding because the use of the 5'-most expected translational start codon renders the transcript a candidate for nonsense-mediated mRNA decay (NMD). This version of transcript variant 1 represents the non protein-coding major allele of this polymorphic locus with a mismatch compared to the reference genome sequence. A second version of transcript variant 1 represents the protein-coding minor allele.
- Source sequence(s)
-
AC005260, AC093055, BC030979
The following sections contain reference sequences that belong to a
specific genome build. Explain
This section includes genomic Reference
Sequences (RefSeqs) from all assemblies on which this gene is annotated, such as
RefSeqs for chromosomes and scaffolds (contigs) from both reference and alternate
assemblies. Model RNAs and proteins are also reported here.
Reference GRCh38.p14 Primary Assembly
Genomic
-
NC_000019.10 Reference GRCh38.p14 Primary Assembly
- Range
-
42924132..42937207 complement
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
Alternate T2T-CHM13v2.0
Genomic
-
NC_060943.1 Alternate T2T-CHM13v2.0
- Range
-
45743086..45756176 complement
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
The following Reference Sequences have been suppressed. Explain
These RefSeqs were suppressed for the
cited reason(s). Suppressed RefSeqs do not appear in BLAST databases, related
sequence links, or BLAST links (BLink), but may still be retrieved by clicking on
their accession.version below.
-
NM_001290042.1: Suppressed sequence
- Description
- NM_001290042.1: This RefSeq was removed because it is redundant with another RefSeq (NM_002783.3), when matched to the current reference genome assembly sequence.