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    SCHCODRAFT_02632672 transcription activator of gluconeogenesis ERT1 [ Schizophyllum commune H4-8 ]

    Gene ID: 9591431, updated on 17-May-2024

    Summary

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    Gene symbol
    SCHCODRAFT_02632672
    Gene description
    transcription activator of gluconeogenesis ERT1
    Locus tag
    SCHCODRAFT_02632672
    See related
    FungiDB:SCHCODRAFT_02632672; VEuPathDB:SCHCODRAFT_02632672
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Schizophyllum commune H4-8 (strain: H4-8)
    Lineage
    Eukaryota; Fungi; Dikarya; Basidiomycota; Agaricomycotina; Agaricomycetes; Agaricomycetidae; Agaricales; Schizophyllaceae; Schizophyllum
    Old locus tag
    SCHCODRAFT_257622
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    Genomic context

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    See SCHCODRAFT_02632672 in Genome Data Viewer
    Location:
    chromosome: Unknown
    Exon count:
    8

    NW_026089545.1Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene S-adenosyl-L-methionine-dependent methyltransferase Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_026089545.1

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The Transcription Factor Roc1 Is a Key Regulator of Cellulose Degradation in the Wood-Decaying Mushroom Schizophyllum commune. Marian IM, et al. mBio, 2022 Jun 28. PMID 35604096, Free PMC Article
    2. Genome sequence of the model mushroom Schizophyllum commune. Ohm RA, et al. Nat Biotechnol, 2010 Sep. PMID 20622885
    3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables RNA polymerase II transcription regulatory region sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in cellular response to starvation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    transcription activator of gluconeogenesis ERT1
    XP_003030426.1
    • hypothetical protein SCHCODRAFT_0257622

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NW_026089545.1 Reference assembly

      Range
      1991645..1994380
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_003030380.2 → XP_003030426.1  transcription activator of gluconeogenesis ERT1 [Schizophyllum commune H4-8]

      See identical proteins and their annotated locations for XP_003030426.1

      Status: PROVISIONAL

      UniProtKB/Swiss-Prot
      D8Q8R5
      Conserved Domains (1) summary
      smart00066
      Location:84 → 125
      GAL4; GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    D8Q8R5.1

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