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    ARR9 response regulator 9 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 824871, updated on 18-Sep-2024

    Summary

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    Official Symbol
    ARR9
    Official Full Name
    response regulator 9
    Primary source
    TAIR:AT3G57040
    Locus tag
    AT3G57040
    See related
    Araport:AT3G57040
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    ATRR4; F24I3_120; RESPONSE REGULATOR 4; response regulator 9
    Summary
    response regulator ARR9, A two-component response regulator-like protein with a receiver domain with a conserved aspartate residue and a possible phosphorylation site and at the N-terminal half. Appears to interact with histidine kinase like genes ATHP3 and ATHP2
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    Genomic context

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    See ARR9 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    6
    Sequence:
    Chromosome: 3; NC_003074.8 (21109059..21111567)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene Calcium-dependent phosphotriesterase superfamily protein Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene cystathionine beta-lyase Neighboring gene binding protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Expression of the cytokinin-induced type-A response regulator gene ARR9 is regulated by the circadian clock in Arabidopsis thaliana. Ishida K, et al. Biosci Biotechnol Biochem, 2008 Nov. PMID 18997423
    2. Nuclear dynamics in Arabidopsis thaliana. Chytilova E, et al. Mol Biol Cell, 2000 Aug. PMID 10930466, Free PMC Article
    3. Stress-responsive expression of genes for two-component response regulator-like proteins in Arabidopsis thaliana. Urao T, et al. FEBS Lett, 1998 May 8. PMID 9607306
    4. Cytokinin regulates type-A Arabidopsis Response Regulator activity and protein stability via two-component phosphorelay. To JP, et al. Plant Cell, 2007 Dec. PMID 18065689, Free PMC Article
    5. Arabidopsis response regulators ARR3 and ARR4 play cytokinin-independent roles in the control of circadian period. Salomé PA, et al. Plant Cell, 2006 Jan. PMID 16326927, Free PMC Article

    See all (14) citations in PubMed

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. the expression of ARR9 is uniquely regulated through the circadian clock in a cytokinin-independent manner
      Title: Expression of the cytokinin-induced type-A response regulator gene ARR9 is regulated by the circadian clock in Arabidopsis thaliana.
    Submit: New GeneRIF Correction

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_115563.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables phosphorelay response regulator activity ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within circadian rhythm IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within cytokinin-activated signaling pathway IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within cytokinin-activated signaling pathway TAS
    Traceable Author Statement
    more info
    		 PubMed 
    acts_upstream_of_or_within phosphorelay signal transduction system IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    acts_upstream_of_or_within phosphorelay signal transduction system ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 
    acts_upstream_of_or_within regulation of DNA-templated transcription TAS
    Traceable Author Statement
    more info
    		 PubMed 
    acts_upstream_of_or_within response to cytokinin IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm ISM
    Inferred from Sequence Model
    more info
    		  
    located_in nucleus IDA
    Inferred from Direct Assay
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    response regulator 9
    NP_191263.1
    • response regulator 9 (ARR9); CONTAINS InterPro DOMAIN/s: CheY-like (InterPro:IPR011006), Signal transduction response regulator, receiver domain (InterPro:IPR001789); BEST Arabidopsis thaliana protein match is: response regulator 3 (TAIR:AT2G41310.1); Has 31916 Blast hits to 31617 proteins in 2439 species: Archae - 203; Bacteria - 27463; Metazoa - 9; Fungi - 302; Plants - 1334; Viruses - 4; Other Eukaryotes - 2601 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      21109059..21111567
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001339837.1 → NP_001325622.1  response regulator 9 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      O80366
      UniProtKB/TrEMBL
      A0A178VC70, A0A5S9XMA1

    2. NM_115563.3 → NP_191263.1  response regulator 9 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_191263.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      O80366
      UniProtKB/TrEMBL
      A0A178VC70, A0A5S9XMA1
      Conserved Domains (2) summary
      PLN03029
      Location:1 → 234
      PLN03029; type-a response regulator protein; Provisional
      cd00156
      Location:12 → 139
      REC; Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems; ...
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    O80366.1

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