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    apobec2 apolipoprotein B mRNA editing enzyme catalytic subunit 2 [ Anolis carolinensis (green anole) ]

    Gene ID: 100554228, updated on 19-Jun-2024

    Summary

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    Gene symbol
    apobec2
    Gene description
    apolipoprotein B mRNA editing enzyme catalytic subunit 2
    See related
    Ensembl:ENSACAG00000016506
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Anolis carolinensis
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Lepidosauria; Squamata; Bifurcata; Unidentata; Episquamata; Toxicofera; Iguania; Dactyloidae; Anolis
    Orthologs
    human mouse all
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    Genomic context

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    See apobec2 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_02 current rAnoCar3.1.pri (GCF_035594765.1) 4 NC_085844.1 (191938902..191960223, complement)
    102 previous assembly AnoCar2.0 (GCF_000090745.1) 4 NC_014779.1 (123345924..123367831)

    Chromosome 4 - NC_085844.1Genomic Context describing neighboring genes Neighboring gene ETS variant transcription factor 7 Neighboring gene nuclear transcription factor Y subunit alpha Neighboring gene O-acyl-ADP-ribose deacylase 1 Neighboring gene translocator protein 2 Neighboring gene BCL2 antagonist/killer 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables cytidine deaminase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in cytidine to uridine editing IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    C->U-editing enzyme APOBEC-2
    Names
    apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 2

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_035594765.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference rAnoCar3.1.pri

    Genomic

    1. NC_085844.1 Reference rAnoCar3.1.pri

      Range
      191938902..191960223 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_003220349.4 → XP_003220397.1  C->U-editing enzyme APOBEC-2

      UniProtKB/TrEMBL
      G1KSP1
      Related
      ENSACAP00000016225.3
      Conserved Domains (3) summary
      pfam05240
      Location:164 → 213
      APOBEC_C; APOBEC-like C-terminal domain
      pfam08210
      Location:58 → 226
      APOBEC_N; APOBEC-like N-terminal domain
      cl00269
      Location:67 → 140
      cytidine_deaminase-like; Cytidine and deoxycytidylate deaminase zinc-binding region. The family contains cytidine deaminases, nucleoside deaminases, deoxycytidylate deaminases and riboflavin deaminases. Also included are the apoBec family of mRNA editing enzymes. All members ...
    Nucleotide Protein
    Heading Accession and Version

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