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    ftr72 finTRIM family, member 72 [ Danio rerio (zebrafish) ]

    Gene ID: 492515, updated on 4-Jan-2025

    Summary

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    Official Symbol
    ftr72provided by ZNC
    Official Full Name
    finTRIM family, member 72provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-041114-86
    See related
    Ensembl:ENSDARG00000026704 AllianceGenome:ZFIN:ZDB-GENE-041114-86
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    zgc:103602
    Summary
    Predicted to enable zinc ion binding activity. Predicted to be located in cytoplasm. Orthologous to human TRIM29 (tripartite motif containing 29). [provided by Alliance of Genome Resources, Jan 2025]
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    Genomic context

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    See ftr72 in Genome Data Viewer
    Location:
    chromosome: 15
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 15 NC_007126.7 (41752335..41756507, complement)
    105 previous assembly GRCz10 (GCF_000002035.5) 15 NC_007126.6 (41794503..41799284, complement)

    Chromosome 15 - NC_007126.7Genomic Context describing neighboring genes Neighboring gene finTRIM family, member 77 Neighboring gene finTRIM family, member 88 Neighboring gene finTRIM family, member 73 Neighboring gene finTRIM family, member 91 Neighboring gene solute carrier family 25 member 36b Neighboring gene uncharacterized LOC137487677 Neighboring gene 2-phosphoxylose phosphatase 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    Related articles in PubMed

    1. Bioinformatics and expression analysis of finTRIM genes in grass carp, Ctenopharyngodon idella. Luo K, et al. Fish Shellfish Immunol, 2017 Jul. PMID 28476675
    2. FTR33, a member of fish-specific TRIM (finTRIM) subfamily, regulates negatively type I IFN antiviral immunity in zebrafish. Huang L, et al. Dev Comp Immunol, 2023 May. PMID 36801427
    3. Fish antiviral tripartite motif (TRIM) proteins. Langevin C, et al. Fish Shellfish Immunol, 2019 Mar. PMID 30550990
    4. A large new subset of TRIM genes highly diversified by duplication and positive selection in teleost fish. van der Aa LM, et al. BMC Biol, 2009 Feb 5. PMID 19196451, Free PMC Article
    5. Origin and evolution of TRIM proteins: new insights from the complete TRIM repertoire of zebrafish and pufferfish. Boudinot P, et al. PLoS One, 2011. PMID 21789205, Free PMC Article

    See all (7) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by ZFIN

    Function Evidence Code Pubs
    enables metal ion binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    finTRIM family, member 72

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001007387.2 → NP_001007388.2  finTRIM family, member 72

      See identical proteins and their annotated locations for NP_001007388.2

      Status: VALIDATED

      Source sequence(s)
      CR853294
      UniProtKB/TrEMBL
      A0A8M1N397, F1R9Z3
      Related
      ENSDARP00000090075.3, ENSDART00000099302.4
      Conserved Domains (3) summary
      pfam00643
      Location:145 → 184
      zf-B_box; B-box zinc finger
      pfam15227
      Location:15 → 57
      zf-C3HC4_4; zinc finger of C3HC4-type, RING
      cd16040
      Location:369 → 540
      SPRY_PRY_SNTX; Stonustoxin subunit alpha or SNTX subunit alpha

    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007126.7 Reference GRCz11 Primary Assembly

      Range
      41752335..41756507 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

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