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    choice-of-anchor C domain protein, putative (Protein of unknown function, DUF642) [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 818014, updated on 18-Sep-2024

    Summary

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    Official Full Name
    choice-of-anchor C domain protein, putative (Protein of unknown function, DUF642)
    Primary source
    TAIR:AT2G34510
    Locus tag
    AT2G34510
    See related
    Araport:AT2G34510
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    T31E10.15; T31E10_15
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    Genomic context

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    Location:
    chromosome: 2
    Exon count:
    3
    Sequence:
    Chromosome: 2; NC_003071.7 (14543894..14546986, complement)

    Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene cytochrome P450, family 710, subfamily A, polypeptide 2 Neighboring gene cytochrome P450, family 710, subfamily A, polypeptide 1 Neighboring gene mitochondrial ribosomal protein S14 Neighboring gene uncharacterized protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003071.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The highly conserved spermatophyte cell wall DUF642 protein family: phylogeny and first evidence of interaction with cell wall polysaccharides in vitro. Vázquez-Lobo A, et al. Mol Phylogenet Evol, 2012 May. PMID 22361214
    2. Identification of glycosylphosphatidylinositol-anchored proteins in Arabidopsis. A proteomic and genomic analysis. Borner GH, et al. Plant Physiol, 2003 Jun. PMID 12805588, Free PMC Article
    3. Prediction of glycosylphosphatidylinositol-anchored proteins in Arabidopsis. A genomic analysis. Borner GH, et al. Plant Physiol, 2002 Jun. PMID 12068095, Free PMC Article
    4. Global Analysis of Membrane-associated Protein Oligomerization Using Protein Correlation Profiling. McBride Z, et al. Mol Cell Proteomics, 2017 Nov. PMID 28887381, Free PMC Article
    5. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_001336517.1
    NM_129003.5

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in endoplasmic reticulum HDA PubMed 
    located_in membrane TAS
    Traceable Author Statement
    more info
    		 PubMed 
    located_in plant-type cell wall IDA
    Inferred from Direct Assay
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    choice-of-anchor C domain protein, putative (Protein of unknown function, DUF642)
    NP_180998.1
    • FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: anchored to membrane; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF642 (InterPro:IPR006946), Galactose-binding domain-like (InterPro:IPR008979); BEST Arabidopsis thaliana protein match is: Protein of unknown function, DUF642 (TAIR:AT1G29980.1); Has 305 Blast hits to 265 proteins in 22 species: Archae - 0; Bacteria - 13; Metazoa - 0; Fungi - 0; Plants - 292; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003071.7 Reference assembly

      Range
      14543894..14546986 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_129003.5 → NP_180998.1  choice-of-anchor C domain protein, putative (Protein of unknown function, DUF642) [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_180998.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VSG3, A0A5S9X3Z2, O64696
      Conserved Domains (3) summary
      PLN03089
      Location:24 → 389
      PLN03089; hypothetical protein; Provisional
      pfam04862
      Location:39 → 200
      DUF642; Protein of unknown function (DUF642)
      cl19911
      Location:211 → 378
      CBM_4_9; Carbohydrate binding domain

    2. NM_001336517.1 → NP_001324678.1  choice-of-anchor C domain protein, putative (Protein of unknown function, DUF642) [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VQW1, A0A1P8B0S6
    Nucleotide Protein
    Heading Accession and Version

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