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    Cbr-sid-1 Protein CBR-SID-1 [ Caenorhabditis briggsae ]

    Gene ID: 8578375, updated on 3-Dec-2024

    Summary

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    Gene symbol
    Cbr-sid-1
    Gene description
    Protein CBR-SID-1
    Locus tag
    CBG_08682
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Caenorhabditis briggsae (strain: AF16)
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
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    Genomic context

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    See Cbr-sid-1 in Genome Data Viewer
    Location:
    chromosome: V
    Exon count:
    6
    Sequence:
    Chromosome: V; NC_013488.2 (7783437..7785912, complement)

    Chromosome V - NC_013488.2Genomic Context describing neighboring genes Neighboring gene Protein CBG27005 Neighboring gene Protein CBG08683 Neighboring gene Protein CBG08681 Neighboring gene Protein CBR-UGT-63

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_013488.2

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The genome sequence of Caenorhabditis briggsae: a platform for comparative genomics. Stein LD, et al. PLoS Biol, 2003 Nov. PMID 14624247, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Gene Ontology Provided by RefSeq

    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    Protein CBR-SID-1
    XP_045093785.1
    • C. briggsae CBR-SID-1 protein;
      Predicted

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_013488.2 Reference assembly

      Range
      7783437..7785912 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_045237311.1 → XP_045093785.1  Protein CBR-SID-1 [Caenorhabditis briggsae]

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0AAE9A6S7, A0AAE9JM57, A8X6T8
      Conserved Domains (1) summary
      pfam13965
      Location:192 → 744
      SID-1_RNA_chan; dsRNA-gated channel SID-1
    Nucleotide Protein
    Heading Accession and Version

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