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    Smr Smrter [ Camponotus floridanus (Florida carpenter ant) ]

    Gene ID: 105253422, updated on 10-Oct-2024

    Summary

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    Gene symbol
    Smr
    Gene description
    Smrter
    Locus tag
    EAG_15373
    See related
    EnsemblRapid:LOC105253422
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Camponotus floridanus
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Hymenoptera; Apocrita; Aculeata; Formicoidea; Formicidae; Formicinae; Camponotus
    Orthologs
    fruit fly honey bee all
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    Genomic context

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    See Smr in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    18
    Annotation release Status Assembly Chr Location
    102 current Cflo_v7.5 (GCF_003227725.1) Unplaced Scaffold NW_020229525.1 (262368..333981)
    101 previous assembly CamFlo_1.0 (GCF_000147175.1) Unplaced Scaffold NW_011882369.1 (200595..235837)

    NW_020229525.1Genomic Context describing neighboring genes Neighboring gene ankyrin repeat and BTB/POZ domain-containing protein BTBD11 Neighboring gene sulfated surface glycoprotein 185-like Neighboring gene mitochondrial ribosomal protein L44 Neighboring gene location of vulva defective 1 Neighboring gene zinc finger protein GLI1 Neighboring gene rhomboid-4 Neighboring gene Meckel syndrome, type 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Genomic comparison of the ants Camponotus floridanus and Harpegnathos saltator. Bonasio R, et al. Science, 2010 Aug 27. PMID 20798317, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    nuclear receptor corepressor 1
    Names
    Nuclear receptor corepressor 2

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Camponotus floridanus Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Cflo_v7.5

    Genomic

    1. NW_020229525.1 Reference Cflo_v7.5

      Range
      262368..333981
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_025411156.1 → XP_025266941.1  nuclear receptor corepressor 1 isoform X1

      Related
      XP_025266941.1, XM_025411156.1
      Conserved Domains (6) summary
      cd00167
      Location:1248 → 1290
      SANT; 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is ...
      pfam15784
      Location:483 → 569
      GPS2_interact; G-protein pathway suppressor 2-interacting domain
      cl21498
      Location:782 → 825
      SANT; 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is ...
      cl25732
      Location:508 → 786
      SMC_N; RecF/RecN/SMC N terminal domain
      cl25742
      Location:1999 → 2187
      ERM; Ezrin/radixin/moesin family
      cl26464
      Location:1473 → 1779
      Atrophin-1; Atrophin-1 family

    2. XM_025411157.1 → XP_025266942.1  nuclear receptor corepressor 1 isoform X2

      Related
      XP_025266942.1, XM_025411157.1
      Conserved Domains (6) summary
      cd00167
      Location:1248 → 1290
      SANT; 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is ...
      pfam15784
      Location:483 → 569
      GPS2_interact; G-protein pathway suppressor 2-interacting domain
      cl21498
      Location:782 → 825
      SANT; 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is ...
      cl25732
      Location:508 → 786
      SMC_N; RecF/RecN/SMC N terminal domain
      cl25742
      Location:1998 → 2186
      ERM; Ezrin/radixin/moesin family
      cl26464
      Location:1472 → 1778
      Atrophin-1; Atrophin-1 family

    3. XM_025411159.1 → XP_025266944.1  nuclear receptor corepressor 1 isoform X4

      Related
      XP_025266944.1, XM_025411159.1
      Conserved Domains (6) summary
      cd00167
      Location:1233 → 1275
      SANT; 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is ...
      pfam15784
      Location:483 → 569
      GPS2_interact; G-protein pathway suppressor 2-interacting domain
      cl21498
      Location:767 → 810
      SANT; 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is ...
      cl25732
      Location:498 → 779
      SMC_N; RecF/RecN/SMC N terminal domain
      cl25742
      Location:1984 → 2172
      ERM; Ezrin/radixin/moesin family
      cl26464
      Location:1458 → 1764
      Atrophin-1; Atrophin-1 family

    4. XM_025411158.1 → XP_025266943.1  nuclear receptor corepressor 1 isoform X3

      Related
      XP_025266943.1, XM_025411158.1
      Conserved Domains (6) summary
      cd00167
      Location:1246 → 1288
      SANT; 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is ...
      pfam15784
      Location:481 → 567
      GPS2_interact; G-protein pathway suppressor 2-interacting domain
      cl21498
      Location:780 → 823
      SANT; 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is ...
      cl25732
      Location:506 → 784
      SMC_N; RecF/RecN/SMC N terminal domain
      cl25742
      Location:1997 → 2185
      ERM; Ezrin/radixin/moesin family
      cl26464
      Location:1471 → 1777
      Atrophin-1; Atrophin-1 family

    5. XM_025411160.1 → XP_025266945.1  nuclear receptor corepressor 1 isoform X5

      Related
      XP_025266945.1, XM_025411160.1
      Conserved Domains (6) summary
      cd00167
      Location:1158 → 1200
      SANT; 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is ...
      pfam15784
      Location:393 → 479
      GPS2_interact; G-protein pathway suppressor 2-interacting domain
      cl21498
      Location:692 → 735
      SANT; 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is ...
      cl25732
      Location:418 → 696
      SMC_N; RecF/RecN/SMC N terminal domain
      cl25742
      Location:1909 → 2097
      ERM; Ezrin/radixin/moesin family
      cl26464
      Location:1383 → 1689
      Atrophin-1; Atrophin-1 family
    Nucleotide Protein Strain
    Heading Accession and Version

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