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    Cyclin family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 834555, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Cyclin family protein
    Primary source
    TAIR:AT5G45190
    Locus tag
    AT5G45190
    See related
    Araport:AT5G45190
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    CYCT1;5; K18C1.7; K18C1_7
    Summary
    Encodes a cyclin T partner CYCT1;5. Plays important roles in infection with Cauliflower mosaic virus (CaMV).
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    Genomic context

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    Location:
    chromosome: 5
    Exon count:
    9
    Sequence:
    Chromosome: 5; NC_003076.8 (18277080..18281909, complement)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene Root hair defective 3 GTP-binding protein (RHD3) Neighboring gene Haloacid dehalogenase-like hydrolase (HAD) superfamily protein Neighboring gene Flavin-binding monooxygenase family protein Neighboring gene Disease resistance protein (TIR-NBS-LRR class) family Neighboring gene Disease resistance protein (TIR-NBS-LRR class) family

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Roles of Arabidopsis cyclin-dependent kinase C complexes in cauliflower mosaic virus infection, plant growth, and development. Cui X, et al. Plant Cell, 2007 Apr. PMID 17468259, Free PMC Article
    2. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_001161291.1
    NM_001344595.1
    NM_123887.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables cyclin-dependent protein serine/threonine kinase regulator activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within flower development IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within leaf development IGI
    Inferred from Genetic Interaction
    more info
    		 PubMed 
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		  
    acts_upstream_of_or_within regulation of viral process IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within response to virus IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    acts_upstream_of_or_within trichome morphogenesis IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    Cyclin family protein
    NP_001154763.1
    • Cyclin family protein; FUNCTIONS IN: cyclin-dependent protein kinase activity; INVOLVED IN: in 6 processes; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Cyclin-like (InterPro:IPR011028), Cyclin-related (InterPro:IPR013763), Transcription regulator cyclin (InterPro:IPR015429), Cyclin, N-terminal (InterPro:IPR006671), Cyclin (InterPro:IPR006670); BEST Arabidopsis thaliana protein match is: Cyclin family protein (TAIR:AT4G19600.1); Has 4079 Blast hits to 3698 proteins in 345 species: Archae - 2; Bacteria - 149; Metazoa - 1860; Fungi - 545; Plants - 474; Viruses - 8; Other Eukaryotes - 1041 (source: NCBI BLink).
    NP_199332.2
    • Cyclin family protein; FUNCTIONS IN: cyclin-dependent protein kinase activity; INVOLVED IN: in 6 processes; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Cyclin-like (InterPro:IPR011028), Transcription regulator cyclin (InterPro:IPR015429), Cyclin-related (InterPro:IPR013763), Cyclin, N-terminal (InterPro:IPR006671), Cyclin (InterPro:IPR006670); BEST Arabidopsis thaliana protein match is: Cyclin family protein (TAIR:AT4G19600.1); Has 4751 Blast hits to 4271 proteins in 366 species: Archae - 7; Bacteria - 169; Metazoa - 2069; Fungi - 662; Plants - 531; Viruses - 15; Other Eukaryotes - 1298 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      18277080..18281909 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_123887.4 → NP_199332.2  Cyclin family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_199332.2

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9FKE6
      UniProtKB/TrEMBL
      A0A178UHI3, A0A654G819
      Conserved Domains (3) summary
      cd20587
      Location:49 → 172
      CYCLIN_AcCycT_rpt1; first cyclin box found in Arabidopsis thaliana T-type cyclins (CycTs) and similar proteins
      cd20588
      Location:176 → 268
      CYCLIN_AcCycT_rpt2; second cyclin box found in Arabidopsis thaliana T-type cyclins (CycTs) and similar proteins
      cl11081
      Location:273 → 341
      dermokine

    2. NM_001344595.1 → NP_001329973.1  Cyclin family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8B9D0, A0A5S9YB55

    3. NM_001161291.1 → NP_001154763.1  Cyclin family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001154763.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UHI3, F4KD43
      Conserved Domains (2) summary
      smart00385
      Location:193 → 279
      CYCLIN; domain present in cyclins, TFIIB and Retinoblastoma
      pfam00134
      Location:33 → 185
      Cyclin_N; Cyclin, N-terminal domain
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9FKE6.2

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