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    Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 819238, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family
    Primary source
    TAIR:AT2G46300
    Locus tag
    AT2G46300
    See related
    Araport:AT2G46300
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    T3F17.5
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    Genomic context

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    Location:
    chromosome: 2
    Exon count:
    2
    Sequence:
    Chromosome: 2; NC_003071.7 (19008175..19009651)

    Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene G-box binding factor 3 Neighboring gene TGF-beta receptor interacting protein 1 Neighboring gene Transducin/WD40 repeat-like superfamily protein Neighboring gene uncharacterized protein Neighboring gene cytokinin response factor 5

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003071.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_130193.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    General protein information

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    Preferred Names
    Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family
    NP_182153.2
    • Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family; CONTAINS InterPro DOMAIN/s: Late embryogenesis abundant protein, group 2 (InterPro:IPR004864); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G01110.1); Has 504 Blast hits to 503 proteins in 23 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 2; Plants - 501; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003071.7 Reference assembly

      Range
      19008175..19009651
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_130193.3 → NP_182153.2  Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_182153.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178W0P0, A0MET7, Q1PEU2, Q8GYZ7
      Conserved Domains (1) summary
      pfam03168
      Location:120 → 226
      LEA_2; Late embryogenesis abundant protein
    Nucleotide Protein
    Heading Accession and Version

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