U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from Protein

    • Showing Current items.

    CIL CCT motif family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 828705, updated on 18-Sep-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    CIL
    Official Full Name
    CCT motif family protein
    Primary source
    TAIR:AT4G25990
    Locus tag
    AT4G25990
    See related
    Araport:AT4G25990
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F20B18.100; F20B18_100
    Summary
    chloroplast import apparatus CIA2-like. CIA2 is a transcription factor which upregulates chloroplast translocon genes
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See CIL in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    3
    Sequence:
    Chromosome: 4; NC_003075.7 (13191085..13194124, complement)

    Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene P-glycoprotein 2 Neighboring gene phosphatidylserine decarboxylase 3 Neighboring gene peroxidase superfamily protein Neighboring gene RNA-binding KH domain-containing protein Neighboring gene Peroxidase superfamily protein Neighboring gene 4/1 protein short form protein

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_003075.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. CIA2 and CIA2-LIKE are required for optimal photosynthesis and stress responses in Arabidopsis thaliana. Gawroński P, et al. Plant J, 2021 Feb. PMID 33119927
    2. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. CIA2 and CIA2-LIKE are required for optimal photosynthesis and stress responses in Arabidopsis thaliana.
      Title: CIA2 and CIA2-LIKE are required for optimal photosynthesis and stress responses in Arabidopsis thaliana.
    Submit: New GeneRIF Correction

    General gene information

    Go to the top of the page Help
    NM_001341771.1
    NM_118732.2
    NM_179114.2

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

    Go to the top of the page Help
    Preferred Names
    CCT motif family protein
    NP_567737.1
    • CIL; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: LP.04 four leaves visible, LP.10 ten leaves visible, LP.02 two leaves visible, petal differentiation and expansion stage, LP.12 twelve leaves visible; CONTAINS InterPro DOMAIN/s: CCT domain (InterPro:IPR010402); BEST Arabidopsis thaliana protein match is: chloroplast import apparatus 2 (TAIR:AT5G57180.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    NP_849445.1
    • CIL; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: LP.04 four leaves visible, LP.10 ten leaves visible, LP.02 two leaves visible, petal differentiation and expansion stage, LP.12 twelve leaves visible; CONTAINS InterPro DOMAIN/s: CCT domain (InterPro:IPR010402); BEST Arabidopsis thaliana protein match is: chloroplast import apparatus 2 (TAIR:AT5G57180.2); Has 1342 Blast hits to 1342 proteins in 91 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 1336; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003075.7 Reference assembly

      Range
      13191085..13194124 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_118732.2 → NP_567737.1  CCT motif family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_567737.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A5S9XWA9, A0A654FT00, Q94KJ2
      Conserved Domains (1) summary
      pfam06203
      Location:341 → 384
      CCT; CCT motif

    2. NM_001341771.1 → NP_001328403.1  CCT motif family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A5S9XWA9, Q9SZH3
      Conserved Domains (1) summary
      pfam06203
      Location:341 → 377
      CCT; CCT motif

    3. NM_179114.2 → NP_849445.1  CCT motif family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_849445.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A5S9XWA9, C0SVJ8
      Conserved Domains (1) summary
      pfam06203
      Location:341 → 399
      CCT; CCT motif
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.