U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from Protein

    • Showing Current items.

    LOC9653699 agmatine deiminase [ Selaginella moellendorffii ]

    Gene ID: 9653699, updated on 22-Oct-2023

    Summary

    Go to the top of the page Help
    Gene symbol
    LOC9653699
    Gene description
    agmatine deiminase
    Locus tag
    SELMODRAFT_108641
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Selaginella moellendorffii
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Lycopodiopsida; Selaginellales; Selaginellaceae; Selaginella
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See LOC9653699 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    100 current v1.0 (GCF_000143415.4) Unplaced Scaffold NW_003314298.1 (809053..810961, complement)

    NW_003314298.1Genomic Context describing neighboring genes Neighboring gene putative pentatricopeptide repeat-containing protein At3g47840 Neighboring gene protein ALP1-like Neighboring gene NAC domain-containing protein 72 Neighboring gene sodium/hydrogen exchanger 4 Neighboring gene uncharacterized LOC112349289 Neighboring gene transfer RNA tryptophan (anticodon CCA) Neighboring gene uncharacterized LOC9653701

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NW_003314298 Unplaced Scaffold Reference v1.0

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables agmatine deiminase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein-arginine deiminase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in putrescine biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    agmatine deiminase

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: Selaginella moellendorffii Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference v1.0

    Genomic

    1. NW_003314298.1 Reference v1.0

      Range
      809053..810961 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_002978500.2 → XP_002978546.1  agmatine deiminase

      See identical proteins and their annotated locations for XP_002978546.1

      UniProtKB/TrEMBL
      D8S534
      Conserved Domains (1) summary
      PLN02690
      Location:1 → 368
      PLN02690; Agmatine deiminase
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials