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    LOC9656915 porphobilinogen deaminase, chloroplastic [ Selaginella moellendorffii ]

    Gene ID: 9656915, updated on 22-Oct-2023

    Summary

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    Gene symbol
    LOC9656915
    Gene description
    porphobilinogen deaminase, chloroplastic
    Locus tag
    SELMODRAFT_164683
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Selaginella moellendorffii
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Lycopodiopsida; Selaginellales; Selaginellaceae; Selaginella
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    Genomic context

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    See LOC9656915 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    100 current v1.0 (GCF_000143415.4) Unplaced Scaffold NW_003314262.1 (1211991..1213626, complement)

    NW_003314262.1Genomic Context describing neighboring genes Neighboring gene ER membrane protein complex subunit 7 homolog Neighboring gene protein ECERIFERUM 3 Neighboring gene very-long-chain 3-oxoacyl-CoA reductase Neighboring gene 5'-3' exoribonuclease 3-like

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_003314262 Unplaced Scaffold Reference v1.0

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables hydroxymethylbilane synthase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in heme biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in peptidyl-pyrromethane cofactor linkage IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    porphobilinogen deaminase, chloroplastic

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Selaginella moellendorffii Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference v1.0

    Genomic

    1. NW_003314262.1 Reference v1.0

      Range
      1211991..1213626 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_002961842.2 → XP_002961888.1  porphobilinogen deaminase, chloroplastic

      See identical proteins and their annotated locations for XP_002961888.1

      UniProtKB/TrEMBL
      D8QTP5
      Conserved Domains (2) summary
      PLN02691
      Location:1 → 353
      PLN02691; porphobilinogen deaminase
      cd13648
      Location:43 → 323
      PBP2_PBGD_1; An uncharacterized subgroup of the PBGD family; the type 2 periplasmic binding protein fold
    Nucleotide Protein
    Heading Accession and Version

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