U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from Protein

    • Showing Current items.

    CPS1 carbamoyl-phosphate synthase 1 [ Protopterus annectens (West African lungfish) ]

    Gene ID: 122805510, updated on 18-Sep-2024

    Summary

    Go to the top of the page Help
    Gene symbol
    CPS1
    Gene description
    carbamoyl-phosphate synthase 1
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Protopterus annectens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Dipnomorpha; Ceratodontiformes; Lepidosirenoidei; Protopteridae; Protopterus
    Orthologs
    human mouse all
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See CPS1 in Genome Data Viewer
    Location:
    chromosome: 6.part1
    Exon count:
    38
    Annotation release Status Assembly Chr Location
    100 current PAN1.0 (GCF_019279795.1) 6.part1 NC_056738.1 (275262232..275794159)

    Chromosome 6.part1 - NC_056738.1Genomic Context describing neighboring genes Neighboring gene origin recognition complex subunit 2 Neighboring gene hyccin PI4KA lipid kinase complex subunit 2 Neighboring gene uncharacterized LOC122805511 Neighboring gene erb-b2 receptor tyrosine kinase 4

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_056738.1 Chromosome 6.part1 Reference PAN1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Phylogenetic aspects of carbamoyl phosphate synthetase in lungfish: a transitional enzyme in transitional fishes. Laberge T, et al. Comp Biochem Physiol Part D Genomics Proteomics, 2011 Jun. PMID 21482211
    2. Salamander-like tail regeneration in the West African lungfish. Verissimo KM, et al. Proc Biol Sci, 2020 Sep 30. PMID 32933441, Free PMC Article
    3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables metal ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in 'de novo' pyrimidine nucleobase biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in L-arginine biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in glutamine metabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of carbamoyl-phosphate synthase complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    carbamoyl-phosphate synthase [ammonia], mitochondrial
    Names
    carbamoyl phosphate synthetase III
    putative carbamoyl phosphate synthetase I

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: Protopterus annectens Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference PAN1.0 Primary Assembly

    Genomic

    1. NC_056738.1 Reference PAN1.0 Primary Assembly

      Range
      275262232..275794159
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_044075706.1 → XP_043931641.1  carbamoyl-phosphate synthase [ammonia], mitochondrial

      UniProtKB/TrEMBL
      F8V254
      Conserved Domains (2) summary
      TIGR01368
      Location:52 → 407
      CPSaseIIsmall; carbamoyl-phosphate synthase, small subunit
      TIGR01369
      Location:424 → 1486
      CPSaseII_lrg; carbamoyl-phosphate synthase, large subunit
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.