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    LOC9324293 ATP phosphoribosyltransferase 1, chloroplastic [ Arabidopsis lyrata subsp. lyrata ]

    Gene ID: 9324293, updated on 19-Jun-2024

    Summary

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    Gene symbol
    LOC9324293
    Gene description
    ATP phosphoribosyltransferase 1, chloroplastic
    Locus tag
    ARALYDRAFT_893674
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Arabidopsis lyrata subsp. lyrata (sub-species: lyrata)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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    Genomic context

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    See LOC9324293 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    101 current v.1.0 (GCF_000004255.2) Unplaced Scaffold NW_003302554.1 (4410176..4415264, complement)

    NW_003302554.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC9322764 Neighboring gene ATP phosphoribosyltransferase 1, chloroplastic Neighboring gene uncharacterized LOC110230891 Neighboring gene putative F-box protein At1g58090

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_003302554 Unplaced Scaffold Reference v.1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ATP phosphoribosyltransferase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables magnesium ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in L-histidine biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    ATP phosphoribosyltransferase 1, chloroplastic
    Names
    chloroplast ATP phosphoribosyl transferase

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Arabidopsis lyrata subsp. lyrata Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference v.1.0 Primary Assembly

    Genomic

    1. NW_003302554.1 Reference v.1.0 Primary Assembly

      Range
      4410176..4415264 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_021034261.1 → XP_020889920.1  ATP phosphoribosyltransferase 1, chloroplastic isoform X2

      Conserved Domains (1) summary
      PLN02245
      Location:1 → 380
      PLN02245; ATP phosphoribosyl transferase

    2. XM_002888184.2 → XP_002888230.1  ATP phosphoribosyltransferase 1, chloroplastic isoform X1

      See identical proteins and their annotated locations for XP_002888230.1

      UniProtKB/TrEMBL
      D7KY80
      Conserved Domains (3) summary
      PLN02245
      Location:1 → 402
      PLN02245; ATP phosphoribosyl transferase
      cd13593
      Location:69 → 296
      PBP2_HisGL3; The catalytic domain of hexameric long form HisGL3; contains the type 2 periplasmic binding protein fold
      pfam08029
      Location:299 → 384
      HisG_C; HisG, C-terminal domain
    Nucleotide Protein
    Heading Accession and Version

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