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    LOC9323048 probable polyamine oxidase 4 [ Arabidopsis lyrata subsp. lyrata ]

    Gene ID: 9323048, updated on 21-Dec-2023

    Summary

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    Gene symbol
    LOC9323048
    Gene description
    probable polyamine oxidase 4
    Locus tag
    ARALYDRAFT_894198
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Arabidopsis lyrata subsp. lyrata (sub-species: lyrata)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    ATPAO4
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    Genomic context

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    See LOC9323048 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    101 current v.1.0 (GCF_000004255.2) Unplaced Scaffold NW_003302554.1 (10285504..10288648)

    NW_003302554.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC9324523 Neighboring gene DNA primase small subunit-like Neighboring gene uncharacterized LOC9323049 Neighboring gene probable disease resistance protein RPP1

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_003302554 Unplaced Scaffold Reference v.1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables polyamine oxidase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in polyamine catabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in peroxisome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    probable polyamine oxidase 4

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Arabidopsis lyrata subsp. lyrata Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference v.1.0 Primary Assembly

    Genomic

    1. NW_003302554.1 Reference v.1.0 Primary Assembly

      Range
      10285504..10288648
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_002886937.2 → XP_002886983.1  probable polyamine oxidase 4

      See identical proteins and their annotated locations for XP_002886983.1

      UniProtKB/TrEMBL
      D7KT07
      Conserved Domains (2) summary
      PLN02268
      Location:29 → 464
      PLN02268; probable polyamine oxidase
      pfam13450
      Location:33 → 100
      NAD_binding_8; NAD(P)-binding Rossmann-like domain
    Nucleotide Protein
    Heading Accession and Version

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