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    LOC9318398 glyceraldehyde-3-phosphate dehydrogenase GAPC1, cytosolic [ Arabidopsis lyrata subsp. lyrata ]

    Gene ID: 9318398, updated on 21-Dec-2023

    Summary

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    Gene symbol
    LOC9318398
    Gene description
    glyceraldehyde-3-phosphate dehydrogenase GAPC1, cytosolic
    Locus tag
    ARALYDRAFT_477673
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Arabidopsis lyrata subsp. lyrata (sub-species: lyrata)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    GAPC
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    Genomic context

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    See LOC9318398 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    101 current v.1.0 (GCF_000004255.2) Unplaced Scaffold NW_003302553.1 (1366378..1368793)

    NW_003302553.1Genomic Context describing neighboring genes Neighboring gene aquaporin SIP1-1 Neighboring gene MADS-box transcription factor 23 Neighboring gene glutamate receptor 1.1 Neighboring gene pentatricopeptide repeat-containing protein At5g65560 Neighboring gene pentatricopeptide repeat-containing protein At3g04130, mitochondrial

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_003302553 Unplaced Scaffold Reference v.1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables NAD binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables NADP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in glucose metabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    glyceraldehyde-3-phosphate dehydrogenase GAPC1, cytosolic
    Names
    glyceraldehyde-3-phosphate dehydrogenase C subunit

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Arabidopsis lyrata subsp. lyrata Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference v.1.0 Primary Assembly

    Genomic

    1. NW_003302553.1 Reference v.1.0 Primary Assembly

      Range
      1366378..1368793
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_002882285.2 → XP_002882331.1  glyceraldehyde-3-phosphate dehydrogenase GAPC1, cytosolic

      See identical proteins and their annotated locations for XP_002882331.1

      UniProtKB/TrEMBL
      D7L218
      Conserved Domains (1) summary
      PLN02358
      Location:1 → 338
      PLN02358; glyceraldehyde-3-phosphate dehydrogenase
    Nucleotide Protein
    Heading Accession and Version

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