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    LOC9317258 uncharacterized LOC9317258 [ Arabidopsis lyrata subsp. lyrata ]

    Gene ID: 9317258, updated on 21-Dec-2023

    Summary

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    Gene symbol
    LOC9317258
    Gene description
    uncharacterized LOC9317258
    Locus tag
    ARALYDRAFT_344930
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Arabidopsis lyrata subsp. lyrata (sub-species: lyrata)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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    Genomic context

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    See LOC9317258 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    101 current v.1.0 (GCF_000004255.2) Unplaced Scaffold NW_003302552.1 (14961277..14963103, complement)

    NW_003302552.1Genomic Context describing neighboring genes Neighboring gene ras-related protein RABA5d Neighboring gene phospholipase A1-Ialpha2, chloroplastic Neighboring gene B3 domain-containing protein At2g31720 Neighboring gene protein FAM136A

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_003302552 Unplaced Scaffold Reference v.1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in vacuolar proton-transporting V-type ATPase complex assembly IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in endoplasmic reticulum membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    uncharacterized protein LOC9317258

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Arabidopsis lyrata subsp. lyrata Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference v.1.0 Primary Assembly

    Genomic

    1. NW_003302552.1 Reference v.1.0 Primary Assembly

      Range
      14961277..14963103 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_021027789.1 → XP_020883448.1  uncharacterized protein LOC9317258

      UniProtKB/TrEMBL
      D7LDN6
      Conserved Domains (1) summary
      pfam09446
      Location:3 → 65
      VMA21; VMA21-like domain

    2. XM_002881145.2 → XP_002881191.1  uncharacterized protein LOC9317258

      See identical proteins and their annotated locations for XP_002881191.1

      UniProtKB/TrEMBL
      D7LDN6
      Conserved Domains (1) summary
      pfam09446
      Location:3 → 65
      VMA21; VMA21-like domain
    Nucleotide Protein
    Heading Accession and Version

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