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    LOC9310690 transmembrane protein 56 [ Arabidopsis lyrata subsp. lyrata ]

    Gene ID: 9310690, updated on 21-Dec-2023

    Summary

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    Gene symbol
    LOC9310690
    Gene description
    transmembrane protein 56
    Locus tag
    ARALYDRAFT_911336
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Arabidopsis lyrata subsp. lyrata (sub-species: lyrata)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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    Genomic context

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    See LOC9310690 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    101 current v.1.0 (GCF_000004255.2) Unplaced Scaffold NW_003302550.1 (20253350..20255341)

    NW_003302550.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC110227735 Neighboring gene uncharacterized LOC110227725 Neighboring gene probable aquaporin NIP5-1 Neighboring gene probable receptor-like protein kinase At4g10390

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_003302550 Unplaced Scaffold Reference v.1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in lipid homeostasis IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in endoplasmic reticulum IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    transmembrane protein 56

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Arabidopsis lyrata subsp. lyrata Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference v.1.0 Primary Assembly

    Genomic

    1. NW_003302550.1 Reference v.1.0 Primary Assembly

      Range
      20253350..20255341
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_002872464.2 → XP_002872510.1  transmembrane protein 56

      See identical proteins and their annotated locations for XP_002872510.1

      UniProtKB/TrEMBL
      D7LY47
      Conserved Domains (1) summary
      smart00724
      Location:54 → 256
      TLC; TRAM, LAG1 and CLN8 homology domains
    Nucleotide Protein
    Heading Accession and Version

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