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    LOC9309713 translocon-associated protein subunit beta [ Arabidopsis lyrata subsp. lyrata ]

    Gene ID: 9309713, updated on 21-Dec-2023

    Summary

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    Gene symbol
    LOC9309713
    Gene description
    translocon-associated protein subunit beta
    Locus tag
    ARALYDRAFT_909359
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Arabidopsis lyrata subsp. lyrata (sub-species: lyrata)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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    Genomic context

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    See LOC9309713 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    101 current v.1.0 (GCF_000004255.2) Unplaced Scaffold NW_003302550.1 (5663877..5665546)

    NW_003302550.1Genomic Context describing neighboring genes Neighboring gene zinc finger protein KNUCKLES Neighboring gene uncharacterized LOC9307666 Neighboring gene mitochondrial phosphate carrier protein 3, mitochondrial Neighboring gene U3 small nucleolar RNA-associated protein 18 homolog

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_003302550 Unplaced Scaffold Reference v.1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Component Evidence Code Pubs
    located_in endoplasmic reticulum IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    translocon-associated protein subunit beta
    Names
    translocon-associated protein beta family protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Arabidopsis lyrata subsp. lyrata Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference v.1.0 Primary Assembly

    Genomic

    1. NW_003302550.1 Reference v.1.0 Primary Assembly

      Range
      5663877..5665546
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_002871551.2 → XP_002871597.1  translocon-associated protein subunit beta

      See identical proteins and their annotated locations for XP_002871597.1

      UniProtKB/TrEMBL
      D7M5Z3
      Conserved Domains (1) summary
      pfam05753
      Location:13 → 192
      TRAP_beta; Translocon-associated protein beta (TRAPB)
    Nucleotide Protein
    Heading Accession and Version

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