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    LOC9305682 probable WRKY transcription factor 34 [ Arabidopsis lyrata subsp. lyrata ]

    Gene ID: 9305682, updated on 21-Dec-2023

    Summary

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    Gene symbol
    LOC9305682
    Gene description
    probable WRKY transcription factor 34
    Locus tag
    ARALYDRAFT_329038
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Arabidopsis lyrata subsp. lyrata (sub-species: lyrata)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    WRKY34
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    Genomic context

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    See LOC9305682 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    101 current v.1.0 (GCF_000004255.2) Unplaced Scaffold NW_003302549.1 (6670015..6672726)

    NW_003302549.1Genomic Context describing neighboring genes Neighboring gene WPP domain-interacting protein 1 Neighboring gene uncharacterized protein At4g26450 Neighboring gene COP9 signalosome complex subunit 6b Neighboring gene gibberellic acid methyltransferase 1

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_003302549 Unplaced Scaffold Reference v.1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    probable WRKY transcription factor 34
    Names
    microspore-specific promoter 3

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Arabidopsis lyrata subsp. lyrata Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference v.1.0 Primary Assembly

    Genomic

    1. NW_003302549.1 Reference v.1.0 Primary Assembly

      Range
      6670015..6672726
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_021017731.1 → XP_020873390.1  probable WRKY transcription factor 34 isoform X1

      Conserved Domains (1) summary
      pfam03106
      Location:181 → 235
      WRKY; WRKY DNA -binding domain

    2. XM_002867518.2 → XP_002867564.1  probable WRKY transcription factor 34 isoform X2

      See identical proteins and their annotated locations for XP_002867564.1

      UniProtKB/TrEMBL
      D7MF96
      Conserved Domains (1) summary
      smart00774
      Location:180 → 235
      WRKY; DNA binding domain
    Nucleotide Protein
    Heading Accession and Version

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