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    LOC9321197 activating signal cointegrator 1 complex subunit 1 [ Arabidopsis lyrata subsp. lyrata ]

    Gene ID: 9321197, updated on 11-Apr-2024

    Summary

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    Gene symbol
    LOC9321197
    Gene description
    activating signal cointegrator 1 complex subunit 1
    Locus tag
    ARALYDRAFT_479075
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Arabidopsis lyrata subsp. lyrata (sub-species: lyrata)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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    Genomic context

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    See LOC9321197 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    101 current v.1.0 (GCF_000004255.2) Unplaced Scaffold NW_003302553.1 (6816926..6819959)

    NW_003302553.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC9321195 Neighboring gene F-box/kelch-repeat protein At5g51250 Neighboring gene putative F-box protein At3g16210 Neighboring gene uncharacterized LOC9319053 Neighboring gene aquaporin TIP2-1

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_003302553 Unplaced Scaffold Reference v.1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in DNA alkylation repair IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    activating signal cointegrator 1 complex subunit 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Arabidopsis lyrata subsp. lyrata Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference v.1.0 Primary Assembly

    Genomic

    1. NW_003302553.1 Reference v.1.0 Primary Assembly

      Range
      6816926..6819959
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_021031662.1 → XP_020887321.1  activating signal cointegrator 1 complex subunit 1 isoform X3

      Conserved Domains (1) summary
      cl26521
      Location:1 → 244
      AKAP7_NLS; AKAP7 2'5' RNA ligase-like domain

    2. XM_021031660.1 → XP_020887319.1  activating signal cointegrator 1 complex subunit 1 isoform X1

      Conserved Domains (1) summary
      cl26521
      Location:1 → 247
      AKAP7_NLS; AKAP7 2'5' RNA ligase-like domain

    3. XM_021031661.1 → XP_020887320.1  activating signal cointegrator 1 complex subunit 1 isoform X2

      Conserved Domains (1) summary
      cl26521
      Location:1 → 246
      AKAP7_NLS; AKAP7 2'5' RNA ligase-like domain

    4. XM_021031664.1 → XP_020887323.1  activating signal cointegrator 1 complex subunit 1 isoform X4

      Conserved Domains (1) summary
      cl26521
      Location:1 → 255
      AKAP7_NLS; AKAP7 2'5' RNA ligase-like domain

    5. XM_021031665.1 → XP_020887324.1  activating signal cointegrator 1 complex subunit 1 isoform X5

      UniProtKB/TrEMBL
      D7L5L8
      Conserved Domains (1) summary
      PLN00108
      Location:1 → 254
      PLN00108; unknown protein; Provisional
    Nucleotide Protein
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