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    • Showing Current items.

    Pmar_PMAR029542 ubiquitin, putative [ Perkinsus marinus ATCC 50983 ]

    Gene ID: 9041405, updated on 28-Dec-2023

    Summary

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    Gene symbol
    Pmar_PMAR029542
    Gene description
    ubiquitin, putative
    Locus tag
    Pmar_PMAR029542
    See related
    VectorBase:PMAR029542
    Gene type
    protein coding
    RNA name
    ubiquitin, putative
    RefSeq status
    PROVISIONAL
    Organism
    Perkinsus marinus ATCC 50983 (strain: ATCC 50983, culture-collection: ATCC:50983)
    Lineage
    Eukaryota; Alveolata; Perkinsea; Perkinsida; Perkinsidae; Perkinsus
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    Genomic context

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    Exon count:
    2

    NW_003206626.1Genomic Context describing neighboring genes Neighboring gene Serine/threonine-protein kinase Nek7, putative Neighboring gene 60S ribosomal protein L11, putative Neighboring gene cyclophilin, putative Neighboring gene retrovirus polyprotein, putative

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_003206626.1

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein tag activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in mRNA splicing, via spliceosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in protein modification process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Names
    ubiquitin, putative
    XP_002773563.1
    • encoded by transcript Pmar_PMAR029542-RA

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    mRNA and Protein(s)

    1. XM_002773517.1 → XP_002773563.1  ubiquitin, putative [Perkinsus marinus ATCC 50983]

      See identical proteins and their annotated locations for XP_002773563.1

      UniProtKB/TrEMBL
      C5LD35
      Conserved Domains (1) summary
      cd01791
      Location:1 → 73
      Ubl5; UBL5 ubiquitin-like modifier
    Nucleotide Protein
    Heading Accession and Version

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