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    LOC100378749 transcription factor 20-like [ Saccoglossus kowalevskii ]

    Gene ID: 100378749, updated on 19-Oct-2023

    Summary

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    Gene symbol
    LOC100378749
    Gene description
    transcription factor 20-like
    See related
    EnsemblRapid:LOC100378749
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Saccoglossus kowalevskii
    Lineage
    Eukaryota; Metazoa; Hemichordata; Enteropneusta; Harrimaniidae; Saccoglossus
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    Genomic context

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    See LOC100378749 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    101 current Skow_1.1 (GCF_000003605.2) Unplaced Scaffold NW_003158734.1 (89995..145324, complement)

    NW_003158734.1Genomic Context describing neighboring genes Neighboring gene myosin-10-like Neighboring gene U4/U6 small nuclear ribonucleoprotein Prp31-like Neighboring gene intraflagellar transport protein 140 homolog

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_003158734 unplaced scaffold reference Skow_1.1 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    transcription factor 20-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Saccoglossus kowalevskii Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Skow_1.1 Primary Assembly

    Genomic

    1. NW_003158734.1 Reference Skow_1.1 Primary Assembly

      Range
      89995..145324 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_002742368.2 → XP_002742414.1  transcription factor 20-like

      Related
      XP_002742414.1, XM_002742368.2
      Conserved Domains (5) summary
      smart00454
      Location:5 → 63
      SAM; Sterile alpha motif
      pfam09606
      Location:70 → 510
      Med15; ARC105 or Med15 subunit of Mediator complex non-fungal
      cd15668
      Location:1362 → 1443
      ePHD_RAI1_like; Extended PHD finger found in retinoic acid-induced protein 1 (RAI1), transcription factor 20 (TCF-20) and similar proteins
      cl15755
      Location:5 → 60
      SAM_superfamily; SAM (Sterile alpha motif )
      cl23782
      Location:239 → 306
      RCR; Chitin synthesis regulation, resistance to Congo red
    Nucleotide Protein
    Heading Accession and Version

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